PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG269300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 635aa    MW: 71687.1 Da    PI: 8.3649
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG269300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.15.9e-081101455791
                 FAR1  57 etrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                          ++r+gC a +kvk +k +g w+ +++++ HnH+l p
  Pavir.3KG269300.1.p 110 SKRCGCPAYVKVKHDKkRGLWYFDHVQQAHNHKLEP 145
                          79************999****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.4E-5110145IPR004330FAR1 DNA binding domain
PfamPF105512.1E-14246304IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MAPPSLIQPP SPAPVPHRYS QALVALGDYT AAFRTRCSSD GEANAPLSMV SLSTVATPTT  60
TPAAAQAPAQ NSEAESTDPL RHVTTLTPPA ALPPGSLQTP DAAQVVYPGS KRCGCPAYVK  120
VKHDKKRGLW YFDHVQQAHN HKLEPSPRMT RYMHAHKNMK EGMCDIFNIM TRNGVPHQAA  180
LNVMADLYDG RHMWGFTEKD IKNMKAEKVR EERDDDLNKL LQFFRECKKN NKHFYWDVDA  240
DPKTGVLIGD ESTGSFRWLF ETFKSCMGGR QPHVILTDED PAMRQAIKVV FDKTHHRNYR  300
WHILRPWEFE LDQLYTQHKD MKLKEKLESL IIIHLGQCNS KMTSTQRSES QNMVLKDGYV  360
NESTSLHMFA KRMLDSLQHA DHMDTGETHY AQAEVVRACK AKFDEQLSRV YTRAVYQEYQ  420
KQYNNSTAFV IEPDLDPRVK NGWLVKHENG EGSFCWAQHA FMVVADKDAV RRIPERYILK  480
RYTRDAKEEV TWDRHDGVHI SAQASKEQCR MSKLLPKLMR LGRAGSKSDH AFEEANRQLD  540
KITPGIEMFP RNADDASSGP APPASGSVEQ SGSAGTNSPQ SSTPMHAGML LIEPPMSRTE  600
GRGTYTRVNY GHRQCSICGV RGTHYSITCP MNPD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG269300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656030.20.0protein FAR1-RELATED SEQUENCE 4-like
RefseqXP_020400315.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020400320.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A3L6Q3951e-125A0A3L6Q395_PANMI; Uncharacterized protein
STRINGPavir.Ea02077.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-23FAR1-related sequence 5