PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG270300.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 530aa    MW: 58672.5 Da    PI: 7.088
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG270300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.32.8e-131332131195
                          HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                           k + +++p   + ++  +++ + t++le ++++ ++v    +++++++ l++GW  Fv a++++egD ++F+++g+s+    v 
  Pavir.3KG270300.3.p 133 VKGCYISIPSILL-KNVTEEAFKATVKLEAPDSKIYSVSA-AQQSDDEIALQSGWDAFVVAHRVQEGDLIIFRYKGSSRL--EVF 213
                          46688999*9999.5545678889****************.4666667**************************997666..444 PP
2B343.65.4e-14375466799
                          .-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
                   B3   7 psdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                          +s  +k+ ++++  ++a+++     +++ tl+le   g++W+  l    ++g++ +++GW eFv +n L  gD+++F+l++  ++ ++ v
  Pavir.3KG270300.3.p 375 TSTGGKNFLMRFATEYARRClP-LATQDLTLQLEGCPGKQWDTVL--HVQGGHVKISGGWAEFVTDNCLWPGDICMFELVKItRRLKMIV 461
                          6778888999999999999964.446889****************..99999***************************98889999999 PP

                          EEE-S CS
                   B3  95 kvfrk 99 
                          +++rk
  Pavir.3KG270300.3.p 462 HLIRK 466
                          99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.898143IPR003340B3 DNA binding domain
CDDcd100172.94E-8241No hitNo description
Gene3DG3DSA:2.40.330.101.5E-8342IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-9442IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-18111226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-16117223IPR015300DNA-binding pseudobarrel domain
CDDcd100177.53E-13120216No hitNo description
SMARTSM010190.016122218IPR003340B3 DNA binding domain
PROSITE profilePS5086311.096123218IPR003340B3 DNA binding domain
PfamPF023621.6E-10130212IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-17361466IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.6E-15361464IPR015300DNA-binding pseudobarrel domain
CDDcd100171.73E-14366465No hitNo description
SMARTSM010199.3E-5368467IPR003340B3 DNA binding domain
PROSITE profilePS5086311.053369467IPR003340B3 DNA binding domain
PfamPF023621.5E-12374466IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MGEIVLRSGW DVFSAAHNLE ENDSLVFKFC GNSTFKVQIY SSHGGSQKIT SCVSPPSEIL  60
EAVLPSTCDH HASKGNEVPY PRHDQETAEF DYLTSGGSCL TKAQDEKVLE MAHTYRSQVP  120
LCVAVMKRTN VDVKGCYISI PSILLKNVTE EAFKATVKLE APDSKIYSVS AAQQSDDEIA  180
LQSGWDAFVV AHRVQEGDLI IFRYKGSSRL EVFILDQNGC QKSSSCFGKG YVSNAQEICD  240
DSVKIIDPPH TTVDIIDLSS SSSDNDDNVA AYTEKSARLQ KRYFDRCAKT RRMDSTSSQS  300
CTLGHDHEDL QAYMVDGVNR SRSPLNSNYY VVPSLPLYII SRKTTLSAAQ EKMVLEKVQA  360
IGSKFPIFVS VMNRTSTGGK NFLMRFATEY ARRCLPLATQ DLTLQLEGCP GKQWDTVLHV  420
QGGHVKISGG WAEFVTDNCL WPGDICMFEL VKITRRLKMI VHLIRKWGVS SRSRDDADVA  480
GPQQGVRDRR RSSRITGNGC ASDVMCARPL CVRGGMGDKS RREGEEELM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG270300.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439346.10.0B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A1E5W3P10.0A0A1E5W3P1_9POAL; Uncharacterized protein
STRINGPavir.J03783.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-16B3 family protein