PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG285000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 110aa MW: 12252.9 Da PI: 8.6828

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG285000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.4	1.3e-14	43	108	1	62
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgC 62 +fY++YA +vGF vr+ ++k + ng +t+++f+Cs+eg+r+ ++++ + k++ +r+ r+gC Pavir.3KG285000.1.p 43 EFYKTYAAHVGFPVRVGQHKAK--NGLVTNKRFYCSREGFRKAKDETqsepecSGKRKCERKIARCGC 108 6**************99887..999**************9999888888888888999999999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-11	43	108	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 110 aa Download sequence Send to blast
MENATPQKSW SVPFCGSSYT PECDDSLKPA VGMTFEDIDS AKEFYKTYAA HVGFPVRVGQ 60 HKAKNGLVTN KRFYCSREGF RKAKDETQSE PECSGKRKCE RKIARCGCL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG285000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827221.1	1e-64	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2T8I9G7	2e-63	A0A2T8I9G7_9POAL; Uncharacterized protein
STRING	Pavir.J26183.1.p	5e-77	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15006	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	3e-12	FAR1-related sequence 12

Link Out ? help Back to Top
Phytozome	Pavir.3KG285000.1.p