PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG287400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 630aa    MW: 73353.8 Da    PI: 8.6524
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG287400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1354.9e-11501022990
                 FAR1  29 tkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          t+r+ vC+++g+++++k+          ++ ++Cka++++++ +d+ w ++  ++eHnHel+
  Pavir.3KG287400.1.p  50 TMREIVCQRQGFDKRTKSL---------TKGCNCKAMIRLHRAEDDGWFISAYVKEHNHELS 102
                          6789999999999886655.........999*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-850102IPR004330FAR1 DNA binding domain
PfamPF105512.0E-26210303IPR018289MULE transposase domain
PROSITE profilePS509669.137461497IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-4469496IPR007527Zinc finger, SWIM-type
SMARTSM005752.2E-4472499IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MGAAERAMRK YGESKGKGGE AKYIFEPYIG LTFDSEPEAT ELYNLHSWET MREIVCQRQG  60
FDKRTKSLTK GCNCKAMIRL HRAEDDGWFI SAYVKEHNHE LSATDAEKRE WSSYKKIEPN  120
TRDMVKYLRE NNVTVSKVHC IMGSLFGSMG NIPFTRRSLR TICAQGAHEQ RDDDMIKTLE  180
IFRKMRADDP GFQFSVDLDS RSDYSCFGDV VTFDTTYSTN LYKMPFGLFV RVDNHFQSTI  240
LGGVFMRDEK AESFKWVFKE FLALMGGVHP QTILTDQCRA MEIAIKEVMS ATGHLWCKWH  300
IFKDARTELG FHKVITEMFT ESEFERAWSD LLKKHKLTDN AFMVRSYDKR KKWTKCYNRE  360
QFCTGMTSTQ RSESANNMLK RVVPRNSSMN RFMENLNKLL YIRYAEEQTA EHETRQQVYE  420
IFTEEMDKSK SYTVFTDQTS EEYTVRHVRP DIVERYRRLE FKVKIINSGE KYRCDCGMQE  480
HIGLLCCHVL RVFIHIGVSE IPAGHIVKRQ LLQKSLIYGK ALEVARKGNQ DFGTYEIVMK  540
YVHLAEKEID KYIDVTTDND CQSKSEAVSA NRHGAPGSCA GMSDDEVVRI KAPPRPPLKS  600
RPRTQRYLFR SLIELTRNKS QRKYLQEMD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG287400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185807.11e-152uncharacterized protein LOC109771528
TrEMBLA0A0A9RI250.0A0A0A9RI25_ARUDO; Uncharacterized protein
STRINGPavir.Eb00053.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-60FAR1-related sequence 5