PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG303500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 339aa    MW: 36665.3 Da    PI: 9.9922
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG303500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.16.1e-1536122186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                          +W++ e+ aL+ a  ++  +l+rg+l++++W+ev++++       ++r   r+ +qCk++ + l+k+yk++++++        s +++f+
  Pavir.3KG303500.1.p  36 CWSDGETAALVSAWGSRYVELNRGNLRQKQWQEVADAVnsrrgasARRRPPRTDVQCKNRVDTLKKKYKAERARNAP------SGWSFFH 119
                          7*****************************************999999999************************97......47***** PP

             trihelix  84 qle 86 
                          +l+
  Pavir.3KG303500.1.p 120 ELD 122
                          *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-2634124No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEVREMAMAA AAAAAVGGAG GKLPPPNPNL PYREDCWSDG ETAALVSAWG SRYVELNRGN  60
LRQKQWQEVA DAVNSRRGAS ARRRPPRTDV QCKNRVDTLK KKYKAERARN APSGWSFFHE  120
LDRLVGPTLS ASASKRPSPP QAPQFALPFH PPALRNHQSP SPSPPPPMAL PLPDYHRGSP  180
LPAAALIQKA AAAAAAVVSD PEDSDDDGGI NNHNSHRSPS HSVSSLSGDN KKRSRDEAGS  240
GGDKGFKELA RAIEAFAEMY ERVENAKQKH ELEMELQRIE FLKQLEVKRM ENFVDAHVKL  300
ARAKRPKKTT GGAADDAGAM ELVATVASMP FVSTSNFL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.68730.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG303500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808496.11e-174trihelix transcription factor ASIL2-like
TrEMBLA0A3L6RBB51e-175A0A3L6RBB5_PANMI; Trihelix transcription factor ASIL2-like
STRINGPavir.J33948.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.16e-30sequence-specific DNA binding transcription factors