PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG305200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HB-other
Protein Properties Length: 1850aa    MW: 205344 Da    PI: 5.7283
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG305200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-1851105357
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                          kR   t++qle+Le+ + +++yp++++r+eL+ +lgLt+rq ++WF+ rR k++k
  Pavir.3KG305200.1.p  51 KRVMKTPYQLEVLERTYTEDSYPNETKRAELSVQLGLTDRQLQMWFCHRRLKDRK 105
                          79999************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.17E-1731105IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-1736105IPR009057Homeodomain-like
PROSITE profilePS5007116.37446106IPR001356Homeobox domain
SMARTSM003891.7E-1648110IPR001356Homeobox domain
PfamPF000461.9E-1651105IPR001356Homeobox domain
CDDcd000868.20E-1451106No hitNo description
SMARTSM005715.5E-19611670IPR018501DDT domain
PROSITE profilePS5082716.047611670IPR018501DDT domain
PfamPF027913.2E-15613667IPR018501DDT domain
PfamPF050666.4E-16793861IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156121.1E-910001042IPR028942WHIM1 domain
PfamPF156137.9E-1411791250IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1850 aa     Download sequence    Send to blast
MESSGDGGDE GAGAPSAAGM GSPGPPSAPA AVGGGSSGAG ASGSGGKPPV KRVMKTPYQL  60
EVLERTYTED SYPNETKRAE LSVQLGLTDR QLQMWFCHRR LKDRKPLAKR QQRDEEVTVP  120
VIAPPPVLPP PLPPSEIMVG TVGAYGEQML PYSRRGPGRS SAVPRISVPE IGSRYYEPPP  180
VILPHMAAVH LTQAEHRVID SVEASIGEPL REDGPVLGIE FDPLPPGAFG APIVPEQPKQ  240
PYRSYESKMF SGHDHKPMKA SAFLPTIDPL LPNTVTGKRK SLVGSSSHLG SQAVHEYQFL  300
PEQPSDIYER ASQSRYYDAP TEVSNSRIAS LSTGSRFLHG AEQAPSYSFH GQLSASSHLA  360
QHGRSPILSG SADHEGALSN INVSPVPIHG QFGIPQVAGF ENSHASSERM AYHDEDTYRV  420
DRKRKHNEEA KIAREVEAHE KRIRKELEKQ DLLNRKREEQ MRRETERHDR ERRKEEERLM  480
RERQREEERF QKEQRREHKR MEKFMQKQSI RAEKLRQKEE LRREKEAARQ KAANERATAR  540
RIAREYMELM EDERLELLEL ACRSKGLPSM LSLDGDTLQQ LDSFRGMLGQ FPPEIVRLKV  600
PFSIKPWAAS EDNIGNLLMV WRFFITFADV LGLPSFTLDE FLQALHDYDS RFLGELHVAL  660
LKSIIKDIED VARTPSVALG VNQSSSANPG GGHPQIVEGA YAWGFNILNW QRHLNFLTWP  720
EILRQFGLCA GFGPQLKKRN AETVYYREDN EGRDGADVIS TLRSGSAAVN AAALMKERGY  780
TNRRRSRHRL TPGTVKFAAF HVLSLEGGKG LTILEVAEKI QKSGLRDLTT SKTPEASISA  840
ALSRDTKLFE RTAPSTYCVK SPYRKDPADS EAVLSAAREK IRVFQNALSE VEKDVDEVER  900
DEDSECDVAD DDADGDDMNI DDKDAKSPLV GAQDGAPVIV VGDIKKESNS VVNTLAPQIS  960
QTKSSESVSL HTFDSKASTS TDPAVGDDAK YTEIDESNQG ESWVQGLAEG DYCDLSVDER  1020
LNALVALIGV ATEGNSIRAI LEERLEAASA LKKQMWAEAQ LDKRRTREDF TSKTQYDSCV  1080
GLKVDTDREN NAAESTLTPV HNPIKNNDGN ASTMNNDLLI DKQNQLITGD IAHQQNGVSR  1140
ESSINPESLS VQQYASSEKT RSQLKSYIGH KAEQLYVYRS LPLGQDRRRN RYWQFSASSS  1200
SYDPGSGRIF FESRDGYWRV IDSAEAFEAL VASLNTRGIR ESHLHSMLQS IEPTFKEAVE  1260
RKKCSTLEQP AGRILKNGSN EIISPNRGNE FGSPCSTLSG VASDNIMAHS DTFKIELGRN  1320
EAEKIAISKR AHVFVKWMWR ECYSHQSTYA MKYGKKRYPE LIQSCDHCYQ IYLTEERHCS  1380
SCHKTFKPIH NFLEHSSQCE EKQRTDPNWK MQIVDHSVPI GLRLLKLLLA TIEASVPAEA  1440
LQPFWTDGYR KSWGAKLYSA SSAEEVLQML TMLEGAVKRD HLSSNFETTT ELLNSNTQDT  1500
NQNSVARSGS AGSATVLPWV PDTTAAVALR LLDLDSSISY TFHPKVASNK DREAGDFTNL  1560
PPRYSAIRNK QEIEHFGAIS FDQQDGMLLA NSNGRRGRGR GSRGGSRGGR SRSRGGKVPR  1620
GISSSSRIQF RDDRNISYEK GPRKIAKNTR GRGRGRGRGR CRGRGRGRGR GRGLRTVRPR  1680
QPSELGTRSI PKANLLGSFS MLSKANRSGT VHSPESSGAG EWALERREYV EDDDNNSVSQ  1740
SDESEDNEEN GEPMNEEYDD EQQVSYQRDN SESSPLQMMD DGSEDNDDAE GDEEGDDGED  1800
YEAEDGGDDD DDVDMGGDGD DDDDDDGGDG VANADVDDGA TSYSSGYSE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
116611671RGRGRGRGRGR
216631672RGRGRGRGRG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.121360.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG305200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808936.10.0homeobox-DDT domain protein RLT2
TrEMBLA0A2S3H9N70.0A0A2S3H9N7_9POAL; Uncharacterized protein
STRINGSi020949m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22833352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator