PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG307300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 395aa    MW: 41917.4 Da    PI: 6.9676
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG307300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.43e-33185242259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK vk+s+fprsYYrCt+++Cpvkk+vers +d  vv++tYeg+H+h+
  Pavir.3KG307300.1.p 185 EDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCPVKKRVERSYQDAAVVITTYEGKHTHP 242
                          8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.5E-35169244IPR003657WRKY domain
SuperFamilySSF1182903.27E-29176244IPR003657WRKY domain
PROSITE profilePS5081131.95179244IPR003657WRKY domain
SMARTSM007743.2E-39184243IPR003657WRKY domain
PfamPF031062.8E-26185242IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MSGARHDHHQ HHLSGDFQFH DELASLFAQR PDAPTPMMQQ PWFTDYLHTS APTPLDYDAF  60
AGHDFDVVLA VDEDVKRELV VDTTGAAAGS GGLTTAAPLT PNSVSMSSTS SEACGAGAGA  120
DEESAGKCKK EEREESKDGS AGGKGDGEGE EKNKKGAAKG KGKGEKRPRQ PRFAFMTKSE  180
VDHLEDGYRW RKYGQKAVKN SPFPRSYYRC TTQKCPVKKR VERSYQDAAV VITTYEGKHT  240
HPIPATLRGS SHLLAAHHHA NLHHQHFRIP GSSAGGGLTF RPGGGAFDAL GLLQPPPPSQ  300
QQLVMSGEGA GAVSGLQQAN AGMPSHALPD QQHGLAAIVG TAAGATAATA TSAATTSSAP  360
LRMQHFMAQD YAGLLQDMFP SFVHNNDDGD NLHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-26175245878Probable WRKY transcription factor 4
2lex_A2e-26175245878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG307300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1016651e-162FP101665.1 Phyllostachys edulis cDNA clone: bphyem202m15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807851.11e-177uncharacterized protein LOC112886239
TrEMBLA0A2S3H9K91e-175A0A2S3H9K9_9POAL; Uncharacterized protein
TrEMBLA0A2T7EA941e-175A0A2T7EA94_9POAL; Uncharacterized protein
STRINGPavir.J10895.1.p1e-173(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.12e-47WRKY DNA-binding protein 71