PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG307700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 597aa    MW: 62326.6 Da    PI: 6.731
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG307700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.7e-31339397259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++vv++tYeg+Hnh+
  Pavir.3KG307700.1.p 339 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDTTVVITTYEGNHNHP 397
                          7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.0E-34323399IPR003657WRKY domain
SuperFamilySSF1182906.02E-28331399IPR003657WRKY domain
PROSITE profilePS5081130.63333399IPR003657WRKY domain
SMARTSM007741.4E-37338398IPR003657WRKY domain
PfamPF031061.6E-26340397IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MMESYLGKRK LNGSGAPASA EREPSGAPAG FQAVVLGYDD DAGEAGAEAR RVVGEMDFFK  60
TEKRKEEAAG RSHSAAGAPD DLSMNKDDLT INMGLHVGRR KSGSEESIVD DGVSSNEVDH  120
RETKAELALA KSEIERLNEE NKQLKNMLNR VTANYNSLQM HVLTLMQQRN NHRGLGAPGH  180
ELNVDPEKRD QDGSQLLPRQ FISLGTAASP DEPPLRSAGA DMRGGDCSAS PSNTDAAMPP  240
PAVDYCPGKG NAATISSKDV MPLPTFDHHH HHHRGGAHER DQRGSSPEDP PPHHVPQGWL  300
HSKVPKFLPA KGPEPVPEAA TMRKARVSVR ARSEAAMISD GCQWRKYGQK MAKGNPCPRA  360
YYRCTMAAGC PVRKQVQRCA EDTTVVITTY EGNHNHPLPP AAMPMASTTA AAASMLLSGS  420
MPSADGSLMA GSNFLARAVL PCSSNVATIS ASAPFPTVTL DLTQPGPGAQ PPPPQQQQPH  480
PDPAQLQAAL ADAARPAALP QLFGQKLYDP SKLSAVQAAA GTAKAAPADA SDTVSAAAVI  540
ASDPNFPAVL AAAIKSYIGA SSSSGAGGSS GTVPPPPPAS SGGDSSRDDK IGEPDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-22329399877Probable WRKY transcription factor 4
2lex_A2e-22329399877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG307700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126131e-172CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807048.10.0WRKY transcription factor 42-like isoform X1
TrEMBLA0A2S3H9N50.0A0A2S3H9N5_9POAL; Uncharacterized protein
STRINGPavir.J00313.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126952734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.16e-78WRKY family protein