PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG309600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 661aa    MW: 69047.2 Da    PI: 8.1682
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG309600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.3e-31407465259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++vv++tYeg+Hnh+
  Pavir.3KG309600.1.p 407 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDTTVVITTYEGNHNHP 465
                          7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-34391467IPR003657WRKY domain
SuperFamilySSF1182907.06E-28399467IPR003657WRKY domain
PROSITE profilePS5081130.63401467IPR003657WRKY domain
SMARTSM007741.4E-37406466IPR003657WRKY domain
PfamPF031061.8E-26408465IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MVTNTAYKDG LRSATGAAEP RHVCAPTAFL YAPGRPPRHS ISSLPPSSSS PSSQLAPIDT  60
HYYSPLRVRM MESYLGKRKL NGSGAPASAE REASGAPAGF QAVVLGYDDD AGEASAEARR  120
VVGEMDFFKT EKRKEEAAGR SHSAAGAPDD LSINKDDLTI NMGLHVGRRK SGSEESVVDD  180
GVSSNEVDHR ETKAELALAK SEIGRLNEEN KQLKNMLSRV TTNYNSLQMH VLTLMQQRNN  240
HRGLGAPGHE LNVDPEKKDQ DGSQLLPRQF ISLGTAASPD EPPPRSAGAD MRGGDCSASP  300
SNTDAAMPPP ADYCAGKGNA ATIGSKDVMP LPTFDHHHRR RRGGAHERDQ RGSSPEDPPP  360
HHVPQGWLPS KVPKFLPAKA PEPVPEAATM RKARVSVRAR SEAAMISDGC QWRKYGQKMA  420
KGNPCPRAYY RCTMAAGCPV RKQVQRCAED TTVVITTYEG NHNHPLPPAA MPMASTTAAA  480
ASMLLSGSMP SADGSLMAGS NFLARAVLPC SSNVATISAS APFPTVTLDL TQPGPGAPQQ  540
QQPPPPPRPD PAQLQAALAD AARPVALPQL FGQKLYDPSK LSAVQAAAGT AKADAGDTVS  600
AAAVIASDPN FPAVLAAAIK SYIGASSSGG GADGSSGTVP PPASSGGDSS RNDKIGEQGS  660
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-22397467877Probable WRKY transcription factor 4
2lex_A2e-22397467877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG309600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209861e-164AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAP0149611e-164AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-164CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807048.10.0WRKY transcription factor 42-like isoform X1
TrEMBLA0A2S3H9N50.0A0A2S3H9N5_9POAL; Uncharacterized protein
STRINGPavir.Ca00949.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126952734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.13e-70WRKY family protein