PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG309600.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 500aa    MW: 52026.4 Da    PI: 8.3981
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG309600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.73.6e-31246304259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++vv++tYeg+Hnh+
  Pavir.3KG309600.2.p 246 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDTTVVITTYEGNHNHP 304
                          7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-34230306IPR003657WRKY domain
SuperFamilySSF1182904.71E-28238306IPR003657WRKY domain
PROSITE profilePS5081130.63240306IPR003657WRKY domain
SMARTSM007741.4E-37245305IPR003657WRKY domain
PfamPF031061.2E-26247304IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MGLHVGRRKS GSEESVVDDG VSSNEVDHRE TKAELALAKS EIGRLNEENK QLKNMLSRVT  60
TNYNSLQMHV LTLMQQRNNH RGLGAPGHEL NVDPEKKDQD GSQLLPRQFI SLGTAASPDE  120
PPPRSAGADM RGGDCSASPS NTDAAMPPPA DYCAGKGNAA TIGSKDVMPL PTFDHHHRRR  180
RGGAHERDQR GSSPEDPPPH HVPQGWLPSK VPKFLPAKAP EPVPEAATMR KARVSVRARS  240
EAAMISDGCQ WRKYGQKMAK GNPCPRAYYR CTMAAGCPVR KQVQRCAEDT TVVITTYEGN  300
HNHPLPPAAM PMASTTAAAA SMLLSGSMPS ADGSLMAGSN FLARAVLPCS SNVATISASA  360
PFPTVTLDLT QPGPGAPQQQ QPPPPPRPDP AQLQAALADA ARPVALPQLF GQKLYDPSKL  420
SAVQAAAGTA KADAGDTVSA AAVIASDPNF PAVLAAAIKS YIGASSSGGG ADGSSGTVPP  480
PASSGGDSSR NDKIGEQGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-22236306877Probable WRKY transcription factor 4
2lex_A1e-22236306877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG309600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209861e-164AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAP0149611e-164AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-164CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807048.10.0WRKY transcription factor 42-like isoform X1
RefseqXP_025807049.10.0probable WRKY transcription factor 31 isoform X2
RefseqXP_025807050.10.0probable WRKY transcription factor 31 isoform X2
TrEMBLA0A3L6RAU70.0A0A3L6RAU7_PANMI; Putative WRKY transcription factor 42
STRINGPavir.Ca00949.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.12e-69WRKY family protein