PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG310500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 224aa    MW: 22904.7 Da    PI: 8.0536
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG310500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.62.2e-20104138135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  Pavir.3KG310500.1.p 104 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 138
                          ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011414.48398134IPR000679Zinc finger, GATA-type
SMARTSM004015.7E-2098150IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.38E-1499139No hitNo description
Gene3DG3DSA:3.30.50.102.4E-17102138IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.22E-13103135No hitNo description
PROSITE patternPS003440104129IPR000679Zinc finger, GATA-type
PfamPF003204.8E-18104138IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MLQELAPCAC GGFYAGGCGG RCAGAAASAF SMLFPAGAEQ CYYYKEEEDG PPYGGGPVDC  60
TLSLGTPSTR RAEAGAGAGG HARAAGGAAP CKESSGRGSP ARRCANCDTT STPLWRNGPR  120
GPKSLCNACG IRYKKEERRA AAAVAPAPAP QEYACGGYAR QQPPQPQWGC YGAAAAKSAS  180
FGMYGGDVVD AAADGPCLSW MLNVMPSSPA FAVRERPTLF QYY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG310500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806644.11e-103GATA transcription factor 15-like
SwissprotQ9ZPX04e-28GAT20_ARATH; GATA transcription factor 20
TrEMBLA0A3L6R9P91e-108A0A3L6R9P9_PANMI; Uncharacterized protein
STRINGPavir.J26908.1.p1e-142(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.14e-25GATA transcription factor 20
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]