PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG334800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 255aa    MW: 27964.5 Da    PI: 4.9853
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG334800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-07102127326
                          S---SGGGGTS...--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartG...tCkyGdrCkFaHg 26 
                           e+C++f+r      C++G+ C+FaHg
  Pavir.3KG334800.1.p 102 GEPCPDFRR-RpgaACPRGSACPFAHG 127
                          589****99.558*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.16499129IPR000571Zinc finger, CCCH-type
SMARTSM003560.01499128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5100131IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5103127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4134165IPR000571Zinc finger, CCCH-type
SMARTSM0035625137160IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVSREHSHSY EDLVLDPAAL EIIPPQLLAA LGEYLSAGRG GDGDAAEAEA EAEAEADDEF  60
MMYEFKVRRC ARARSHDWTA CPYAHPGEAA RRRDPRRVAY AGEPCPDFRR RPGAACPRGS  120
ACPFAHGTFE LWLHPSRYRT RPCRAGAACR RRVCFFAHAA AELRAAPKDD SLSLSPKSTL  180
ASLWESPPVS PVEGRMRWLD AIDEPSDADA EVEELMLAMR ELSFRKAAAS SAPVLPPVME  240
EDGPDLGWVS ELVM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.44790.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG334800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0676910.0BT067691.1 Zea mays full-length cDNA clone ZM_BFc0130E04 mRNA, complete cds.
GenBankEU9536020.0EU953602.1 Zea mays clone 1437892 CCCH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303637.11e-144zinc finger CCCH domain-containing protein 37-like
SwissprotQ65X921e-127C3H37_ORYSJ; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A1Z5R4P21e-142A0A1Z5R4P2_SORBI; Uncharacterized protein
STRINGSi022958m1e-134(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112091926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.15e-36C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]