PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG340600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 382aa    MW: 39360.1 Da    PI: 5.8485
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG340600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.6e-18252286135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Pavir.3KG340600.1.p 252 CLHCETDKTPQWRTGPLGPKTLCNACGVRYKSGRL 286
                          99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.6E-672339IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.268246282IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.7E-15246283IPR013088Zinc finger, NHR/GATA-type
SMARTSM004013.7E-17246296IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.9E-15247309No hitNo description
CDDcd002022.32E-13251298No hitNo description
PROSITE patternPS003440252277IPR000679Zinc finger, GATA-type
PfamPF003207.6E-16252286IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEVPAECAGG GRVKKEADLF LVDDLLDLPC DGDEEEVQEA VVEEGEGEGS KARDCGGAGG  60
EDGAAGNASN DSSTVTALDS CSNSLSGLAD GDFSGGLCEP YDQLAELEWL SNYMGEDNFP  120
TEDLKKLQLI TGIPPASASA SAATAFAPTP APAAAAAQPG GGVLPPEAPV PGKARSKRSR  180
VAPCSWASRL LVLPPTPASP PSPASAAISP SESGTAAPAF PAKKPSKPTK KKEAPKAPAP  240
NAAASGGEGR RCLHCETDKT PQWRTGPLGP KTLCNACGVR YKSGRLVPEY RPAASPTFVV  300
SKHSNSHRKV LELRRQKEAH LHPHHQYQPQ PQALGQHVGA GAAGGLMYAP GPLLFDGPAG  360
PLIGDDFVIH NRIGPDFRQL I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG340600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961467.11e-151GATA transcription factor 12
TrEMBLA0A1E5VH410.0A0A1E5VH41_9POAL; GATA transcription factor 9
STRINGPavir.Ca01659.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.14e-63GATA transcription factor 12