PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG346100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

VOZ

Protein Properties

Length: 427aa MW: 47873.3 Da PI: 6.114

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG346100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	411.6	1.4e-126	103	320	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaataksp 89 p+ps++lgpkcalwdc rp+ gse+ dyc+ +ha laln+ gl+gt+pv+rp+gidlkdg+lf al akvqgk+vgip+c gaat+ksp Pavir.3KG346100.1.p 103 PSPSQYLGPKCALWDCGRPVGGSEDSGDYCNPYHAGLALNDdGLLGTRPVMRPRGIDLKDGPLFTALIAKVQGKNVGIPVCGGAATSKSP 192 89************************************9799****************************************** PP VOZ 90 wnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeinelda 179 wna+elfdlsllege++rewlffd+prrafesgnrkqrslpdy+grgwhesrkqvmk+f+glkrsyymdpqpsss+ewhl+eyein +da Pavir.3KG346100.1.p 193 WNAPELFDLSLLEGESLREWLFFDTPRRAFESGNRKQRSLPDYNGRGWHESRKQVMKDFAGLKRSYYMDPQPSSSHEWHLFEYEINASDA 282 ************************************************************************************** PP VOZ 180 lalyrlelklvdekksakgkvskdsladlqkklgrlta 217 lalyrle+k++d+kk ak+k++++sl+++q++++rlta Pavir.3KG346100.1.p 283 LALYRLEYKSSDSKKGAKSKLASSSLTEIQQQMVRLTA 320 **********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MAWIQLTLFN KKKPLSYLWL QVYYIDHDLS IDDFLQDDDY KINLPGSNED HFNNLDGLGP 60 LEHQQFDLPL DLPPESYADA NNSEQNTGDV FVHMSDLLTT IWPSPSQYLG PKCALWDCGR 120 PVGGSEDSGD YCNPYHAGLA LNDDGLLGTR PVMRPRGIDL KDGPLFTALI AKVQGKNVGI 180 PVCGGAATSK SPWNAPELFD LSLLEGESLR EWLFFDTPRR AFESGNRKQR SLPDYNGRGW 240 HESRKQVMKD FAGLKRSYYM DPQPSSSHEW HLFEYEINAS DALALYRLEY KSSDSKKGAK 300 SKLASSSLTE IQQQMVRLTA DSPVENKRTA RSKTKANHKD TNAKAFAQVN TPSQVNSSNA 360 YQAAPQVNQM TFLNENVVYG PHLPHSENVI YGPHLPHSEN IMYGPHLPHG YSAEGSSFFW 420 NRRDGT*

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MAWIQLTLFN KKKPLSYLWL QVYYIDHDLS IDDFLQDDDY KINLPGSNED HFNNLDGLGP  60
LEHQQFDLPL DLPPESYADA NNSEQNTGDV FVHMSDLLTT IWPSPSQYLG PKCALWDCGR  120
PVGGSEDSGD YCNPYHAGLA LNDDGLLGTR PVMRPRGIDL KDGPLFTALI AKVQGKNVGI  180
PVCGGAATSK SPWNAPELFD LSLLEGESLR EWLFFDTPRR AFESGNRKQR SLPDYNGRGW  240
HESRKQVMKD FAGLKRSYYM DPQPSSSHEW HLFEYEINAS DALALYRLEY KSSDSKKGAK  300
SKLASSSLTE IQQQMVRLTA DSPVENKRTA RSKTKANHKD TNAKAFAQVN TPSQVNSSNA  360
YQAAPQVNQM TFLNENVVYG PHLPHSENVI YGPHLPHSEN IMYGPHLPHG YSAEGSSFFW  420
NRRDGT*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.18437	1e-83	callus\| leaf\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG346100.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT039629	0.0	BT039629.1 Zea mays full-length cDNA clone ZM_BFc0035D15 mRNA, complete cds.
GenBank	BT055284	0.0	BT055284.1 Zea mays full-length cDNA clone ZM_BFc0117C20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808296.1	0.0	transcription factor VOZ1-like
Swissprot	Q9SGQ0	1e-114	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A2S3HAS6	0.0	A0A2S3HAS6_9POAL; Uncharacterized protein
STRING	Pavir.J03187.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2343	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-103	vascular plant one zinc finger protein

Link Out ? help Back to Top
Phytozome	Pavir.3KG346100.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]