PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG351200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family VOZ
Protein Properties Length: 599aa    MW: 65712.5 Da    PI: 5.5492
Description VOZ family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG351200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1VOZ410.72.7e-1262754921217
                  VOZ   1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaataksp 89 
                          p+ps++lgpkcalwdc rp+ gse+  dyc+ +ha laln+ gl+gt+pv+rp+gidlkdg+lf al akvqgk+vgip+c gaat+ksp
  Pavir.3KG351200.1.p 275 PSPSQYLGPKCALWDCGRPVGGSEDSGDYCNPYHAGLALNDdGLLGTRPVMRPRGIDLKDGPLFTALIAKVQGKNVGIPVCGGAATSKSP 364
                          89**************************************9799********************************************** PP

                  VOZ  90 wnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeinelda 179
                          wna+elfdlsllege++rewlffd+prrafesgnrkqrslpdy+grgwhesrkqvmk+f+glkrsyymdpqpsss+ewhl+eyein +da
  Pavir.3KG351200.1.p 365 WNAPELFDLSLLEGESLREWLFFDTPRRAFESGNRKQRSLPDYNGRGWHESRKQVMKDFEGLKRSYYMDPQPSSSHEWHLFEYEINASDA 454
                          ****************************************************************************************** PP

                  VOZ 180 lalyrlelklvdekksakgkvskdsladlqkklgrlta 217
                          lalyrle+k++d+kk ak+k++++sl+++q++++rlta
  Pavir.3KG351200.1.p 455 LALYRLEYKSSDSKKGAKSKLASSSLTEIQQQMVRLTA 492
                          ************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MVGDPASGGG GAAHPASGGK GSRSSTRHRQ FRDRAKNRVD DLQEMFSGLQ SARKESRSAD  60
AAVLEEQVHQ MLREWRAELS APSPASSLQN SQGNNRGASD PPSETLRLLQ LAVADEEDDA  120
TSRLTVPRSP LQVPAFHQNQ GQGHGQEAQM PNLNQQCEVV AGGAAPSQQL LDQGVQGDCG  180
EVAAVANAMF NEQMYYIDHE LSIDDFLQDD DYKINLPGSN EDHFNNLHGI GPLEHQQFDL  240
PLDLPPESYA DANNPEQNTG DVFVHMSDLL TTIWPSPSQY LGPKCALWDC GRPVGGSEDS  300
GDYCNPYHAG LALNDDGLLG TRPVMRPRGI DLKDGPLFTA LIAKVQGKNV GIPVCGGAAT  360
SKSPWNAPEL FDLSLLEGES LREWLFFDTP RRAFESGNRK QRSLPDYNGR GWHESRKQVM  420
KDFEGLKRSY YMDPQPSSSH EWHLFEYEIN ASDALALYRL EYKSSDSKKG AKSKLASSSL  480
TEIQQQMVRL TADSPVENKR TARSKPKANH KDTNAKAFAH VNTPSQVNSS NAYQAAPQVN  540
QMTFLNENVV YGPHLPHSEN VVYGPHLPHS ENVVYGPQLP HGCSAEGSSF FWNRRDGT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.184370.0callus| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG351200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0396290.0BT039629.1 Zea mays full-length cDNA clone ZM_BFc0035D15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808296.10.0transcription factor VOZ1-like
SwissprotQ9SGQ01e-149VOZ1_ARATH; Transcription factor VOZ1
TrEMBLA0A2T7EBK50.0A0A2T7EBK5_9POAL; Uncharacterized protein
STRINGPavir.Ca01693.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23433888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28520.21e-129vascular plant one zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yasui Y,Kohchi T
    VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis.
    Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5
    [PMID:25351333]
  3. Kumar S,Choudhary P,Gupta M,Nath U
    VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition.
    Plant Physiol., 2018. 176(4): p. 2917-2930
    [PMID:29507119]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]