PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG351200.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

VOZ

Protein Properties

Length: 596aa MW: 65383.2 Da PI: 5.5492

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG351200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	410.7	2.7e-126	272	489	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaataksp 89 p+ps++lgpkcalwdc rp+ gse+ dyc+ +ha laln+ gl+gt+pv+rp+gidlkdg+lf al akvqgk+vgip+c gaat+ksp Pavir.3KG351200.2.p 272 PSPSQYLGPKCALWDCGRPVGGSEDSGDYCNPYHAGLALNDdGLLGTRPVMRPRGIDLKDGPLFTALIAKVQGKNVGIPVCGGAATSKSP 361 89************************************9799****************************************** PP VOZ 90 wnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeinelda 179 wna+elfdlsllege++rewlffd+prrafesgnrkqrslpdy+grgwhesrkqvmk+f+glkrsyymdpqpsss+ewhl+eyein +da Pavir.3KG351200.2.p 362 WNAPELFDLSLLEGESLREWLFFDTPRRAFESGNRKQRSLPDYNGRGWHESRKQVMKDFEGLKRSYYMDPQPSSSHEWHLFEYEINASDA 451 ************************************************************************************** PP VOZ 180 lalyrlelklvdekksakgkvskdsladlqkklgrlta 217 lalyrle+k++d+kk ak+k++++sl+++q++++rlta Pavir.3KG351200.2.p 452 LALYRLEYKSSDSKKGAKSKLASSSLTEIQQQMVRLTA 489 **********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 596 aa Download sequence Send to blast
MVGDPASGGG GAAHPASGGK GSRSSTRHRQ FRDRAKNRVD DLQEMFSGLQ SARKESRSAD 60 AAVLEEQVHQ MLREWRAELS APSPASSLQG NNRGASDPPS ETLRLLQLAV ADEEDDATSR 120 LTVPRSPLQV PAFHQNQGQG HGQEAQMPNL NQQCEVVAGG AAPSQQLLDQ GVQGDCGEVA 180 AVANAMFNEQ MYYIDHELSI DDFLQDDDYK INLPGSNEDH FNNLHGIGPL EHQQFDLPLD 240 LPPESYADAN NPEQNTGDVF VHMSDLLTTI WPSPSQYLGP KCALWDCGRP VGGSEDSGDY 300 CNPYHAGLAL NDDGLLGTRP VMRPRGIDLK DGPLFTALIA KVQGKNVGIP VCGGAATSKS 360 PWNAPELFDL SLLEGESLRE WLFFDTPRRA FESGNRKQRS LPDYNGRGWH ESRKQVMKDF 420 EGLKRSYYMD PQPSSSHEWH LFEYEINASD ALALYRLEYK SSDSKKGAKS KLASSSLTEI 480 QQQMVRLTAD SPVENKRTAR SKPKANHKDT NAKAFAHVNT PSQVNSSNAY QAAPQVNQMT 540 FLNENVVYGP HLPHSENVVY GPHLPHSENV VYGPQLPHGC SAEGSSFFWN RRDGT*

Sequence ? help Back to Top

Protein Sequence Length: 596 aa Download sequence Send to blast

MVGDPASGGG GAAHPASGGK GSRSSTRHRQ FRDRAKNRVD DLQEMFSGLQ SARKESRSAD  60
AAVLEEQVHQ MLREWRAELS APSPASSLQG NNRGASDPPS ETLRLLQLAV ADEEDDATSR  120
LTVPRSPLQV PAFHQNQGQG HGQEAQMPNL NQQCEVVAGG AAPSQQLLDQ GVQGDCGEVA  180
AVANAMFNEQ MYYIDHELSI DDFLQDDDYK INLPGSNEDH FNNLHGIGPL EHQQFDLPLD  240
LPPESYADAN NPEQNTGDVF VHMSDLLTTI WPSPSQYLGP KCALWDCGRP VGGSEDSGDY  300
CNPYHAGLAL NDDGLLGTRP VMRPRGIDLK DGPLFTALIA KVQGKNVGIP VCGGAATSKS  360
PWNAPELFDL SLLEGESLRE WLFFDTPRRA FESGNRKQRS LPDYNGRGWH ESRKQVMKDF  420
EGLKRSYYMD PQPSSSHEWH LFEYEINASD ALALYRLEYK SSDSKKGAKS KLASSSLTEI  480
QQQMVRLTAD SPVENKRTAR SKPKANHKDT NAKAFAHVNT PSQVNSSNAY QAAPQVNQMT  540
FLNENVVYGP HLPHSENVVY GPHLPHSENV VYGPQLPHGC SAEGSSFFWN RRDGT*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.18437	0.0	callus\| leaf\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG351200.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT039629	0.0	BT039629.1 Zea mays full-length cDNA clone ZM_BFc0035D15 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808296.1	0.0	transcription factor VOZ1-like
Swissprot	Q9SGQ0	1e-148	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A2T7EBK5	0.0	A0A2T7EBK5_9POAL; Uncharacterized protein
STRING	Pavir.Ca01693.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-130	vascular plant one zinc finger protein

Link Out ? help Back to Top
Phytozome	Pavir.3KG351200.2.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]