PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG372000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 232aa    MW: 23694.7 Da    PI: 8.0586
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG372000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.97.8e-212576156
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         ++++GVr ++ +gr++AeIrdp    k+ r++lg+++taeeAa+a++aa+++++g+
  Pavir.3KG372000.1.p 25 PHFRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTYDTAEEAARAYDAAAREYRGA 76
                         689*******.**********83...36**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-142575IPR001471AP2/ERF domain
CDDcd000189.72E-172582No hitNo description
SuperFamilySSF541717.19E-232685IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.2E-322684IPR001471AP2/ERF domain
SMARTSM003804.2E-362689IPR001471AP2/ERF domain
PROSITE profilePS5103223.8412683IPR001471AP2/ERF domain
PRINTSPR003671.0E-102738IPR001471AP2/ERF domain
PRINTSPR003671.0E-104965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAPRTSEKTM APAAAAPGLA LGVGPHFRGV RKRPWGRYAA EIRDPAKKSR VWLGTYDTAE  60
EAARAYDAAA REYRGAKAKT NFPYSSSSPM PPAATAGTGG SRSGDSSTVE SFGGDVQAPM  120
QAMPLPPSLE LDLFHSAAAA GAGAGAGVRF PFGSYPVTHP YYFFGQAAAG CHMQLKLPPP  180
TVTVAAVAPC DSDSSSVVDL SPPPLAGAVS AKKASAFDLD LNCPPPAEAE A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-222488368ATERF1
3gcc_A6e-222488368ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.41371e-146callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG372000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807617.14e-90ethylene-responsive transcription factor 8-like
TrEMBLA0A3L6R5121e-100A0A3L6R512_PANMI; Ethylene-responsive transcription factor 4
STRINGPavir.Ca01358.1.p1e-110(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.19e-18erf domain protein 9