PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG372400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 218aa    MW: 22689.6 Da    PI: 10.1076
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG372400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.2e-1960109255
                  AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr ++ +gr++AeIrd +     r +r++lg+++++ eAa a+++a+ +l+g
  Pavir.3KG372400.1.p  60 HYRGVRKRP-WGRYAAEIRDpW-----RkTRVWLGTYDSPVEAAMAYDRAAAALRG 109
                          6********.**********88.....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.63E-1759116No hitNo description
SMARTSM003806.3E-3160123IPR001471AP2/ERF domain
PROSITE profilePS5103221.4760117IPR001471AP2/ERF domain
PfamPF008471.7E-1260109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-2860116IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-2160117IPR016177DNA-binding domain
PRINTSPR003674.1E-96172IPR001471AP2/ERF domain
PRINTSPR003674.1E-98399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MQMEWDMRGG GGGGGVGVGV AVGGGARAGG LAAAGGVVVG GGDQHHHQQQ HHHQQRVEAH  60
YRGVRKRPWG RYAAEIRDPW RKTRVWLGTY DSPVEAAMAY DRAAAALRGP KARLNFGGGG  120
GCGRARDGAP AYHPRVPLQA RCQLFAAGLD AGRPSPSPWP HVVCFPPPVL HQTAAPPAWQ  180
PLLAADVAAA QPSTALELRT GPPALPFDLN EPPSNGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-1960116562ATERF1
3gcc_A8e-1960116562ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG372400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809088.11e-85ethylene-responsive transcription factor RAP2-1-like
TrEMBLA0A3L6T1I15e-86A0A3L6T1I1_PANMI; AP2-EREBP transcription factor
STRINGPavir.J36215.1.p4e-88(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.15e-23ERF domain protein 12