PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG373700.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 187aa    MW: 20911.4 Da    PI: 4.9896
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG373700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like31.53.9e-101203655
              G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                         m+v+g+t++hvkSHLQkYRl
  Pavir.3KG373700.2.p  1 MGVPGITIYHVKSHLQKYRL 20
                         99*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-9121IPR009057Homeodomain-like
PfamPF143794.5E-245398IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MGVPGITIYH VKSHLQKYRL AKYIPESPAE GSKDEKKDSS DSLSNTDSAP GLQINEALKM  60
QMEVQKRLHE QLEVQRQLQL RIEAQGRYLQ MIIEEQQKLG GSFKASEDEK LSHSPPSLDE  120
YPESTQPSPK KPRIDALSPD SERDTTQSEF ESHLIGPWDQ EICGKNLCGV AFPVEEFKAD  180
PGMSKS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.91090.0callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG373700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0984181e-170FP098418.1 Phyllostachys edulis cDNA clone: bphyem127d16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961661.11e-129myb family transcription factor PHL7
SwissprotQ9SJW01e-47PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A2T7EC731e-130A0A2T7EC73_9POAL; Uncharacterized protein
TrEMBLA0A2T7EC951e-131A0A2T7EC95_9POAL; Uncharacterized protein
STRINGPavir.J05174.1.p1e-134(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.23e-29G2-like family protein