PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG384600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 259aa    MW: 27780.5 Da    PI: 6.1601
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG384600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.22.9e-08145187855
                          HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            r+RR+ri ++ ++L +l+P       +K++ ae+Le+A +++k Lq
  Pavir.3KG384600.1.p 145 TARQRRKRISEKTAKLSRLIPGG-----RKMNTAEMLEEAARHVKLLQ 187
                          569******************96.....7****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.836137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-9141193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-10142194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-9143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.25E-9143190No hitNo description
PfamPF000101.0E-5145187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MSFFLQDVHP EVTDALLGFV YDPLDPANAA LDDLLNLPPH DDDDDAFLRP IHGDGEGKVE  60
RHCAKKQRAC GDGAWRGLAR IGTSQQSNDG CNQQVPEPPN EFVLPLPLPL PPPPHPLLPE  120
APALVRVADA NKAMGNVSQS VQSATARQRR KRISEKTAKL SRLIPGGRKM NTAEMLEEAA  180
RHVKLLQAQV GVLALMRTVG STDEKQNEKV PSMAQEQMHA LLVCGSLADA VASDSSVNSN  240
ALVSRDLGRF VASLQAGQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG384600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661333.11e-110uncharacterized protein LOC101765829
TrEMBLA0A2T7CI401e-125A0A2T7CI40_9POAL; Uncharacterized protein
STRINGPavir.Ca01784.1.p1e-161(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.11e-14bHLH family protein