PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG387700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 413aa    MW: 44075.4 Da    PI: 7.152
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG387700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY863.5e-27221280258
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                          dDgy+WrKYGqK++ gs++prsYYrCt++   gC++kkkv+r ++dp + e+tY g+H++
  Pavir.3KG387700.1.p 221 DDGYTWRKYGQKDILGSRYPRSYYRCTHKnyyGCEAKKKVQRLDDDPFMYEVTYCGNHTC 280
                          8***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-27213280IPR003657WRKY domain
SuperFamilySSF1182901.16E-24218280IPR003657WRKY domain
SMARTSM007746.8E-38220282IPR003657WRKY domain
PROSITE profilePS5081121.643221278IPR003657WRKY domain
PfamPF031062.0E-25221280IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MHVLAAHLGP PLALFGGSLE HRDSSSITRE PVVVGRRAMD DAVLQIEDAF GLARELMAEL  60
HATQQNDPAY LAGCCQRIAQ AYLAASRMLG PHPPHGADDL SPRALPPHHP FGDGSGSSHG  120
HLQQLELLRP FLSGGGAPSS APFQQQHLGR LLEPSPFNTS TTSPDMFGAG TSGGPVRRQA  180
SSSRSSPPVQ PRQHRRRRES GERMTMMVPV QRTGNTDLPP DDGYTWRKYG QKDILGSRYP  240
RSYYRCTHKN YYGCEAKKKV QRLDDDPFMY EVTYCGNHTC LTSTTPLLTL PAPTATAVST  300
AAASMLTNSP TGSSAAILAG QDLVMAPAAE HPTPALSTAI QLGISWMPST RIGPGAGEGS  360
SRAQMDLPAA SGTRDTEFLV MDLADAMFNS GSSGGSSMDG IFPAHHHDQR DS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-21221280968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG387700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2878172e-94AK287817.1 Oryza sativa Japonica Group cDNA, clone: J065181J09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809471.10.0uncharacterized protein LOC112887503
TrEMBLA0A2T7EFG40.0A0A2T7EFG4_9POAL; Uncharacterized protein
STRINGPavir.Ca01708.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97963344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.15e-36WRKY DNA-binding protein 55