PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG387800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 312aa    MW: 32621 Da    PI: 5.8268
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG387800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.41.6e-24109169259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqKe+++s++p++Y+rCt++   +C + ++v+r+++dp+++ +tY g H+++
  Pavir.3KG387800.1.p 109 EDGHAWRKYGQKEIQNSKHPKAYFRCTHKydqQCAALRQVQRCDDDPDAFRVTYIGVHTCR 169
                          8***************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-2595171IPR003657WRKY domain
SuperFamilySSF1182902.88E-24102171IPR003657WRKY domain
PROSITE profilePS5081119.933103171IPR003657WRKY domain
SMARTSM007742.3E-34108170IPR003657WRKY domain
PfamPF031061.8E-22109169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAAAAAPYAQ VMEDMRRGRD LATQLQALLR DSPEAGRLVD RILHAMSRTI ETARAAAAAE  60
EGSEGQSEVT CAGSGAGKRK AAGGGDKRAA CRRRAQNSST VTVTIKDIED GHAWRKYGQK  120
EIQNSKHPKA YFRCTHKYDQ QCAALRQVQR CDDDPDAFRV TYIGVHTCRD PAAVAPVVLQ  180
SADELHAGSR LISFAPNSSA TTASTTTTGN TSQQGDHKGA ALLAGLRPLK LEAGAGAGEQ  240
EEVLSSLTPA GSSAAAEAAR NAAATPGPDQ GDVTSGLQHC YGGGLADMAP FDDGTFDLDD  300
LFGFDHGEAD Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-35102169269OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG387800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586310.0KU058631.1 UNVERIFIED: Panicum miliaceum WRKY27-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962450.11e-173probable WRKY transcription factor 70
TrEMBLA0A3L6SUS20.0A0A3L6SUS2_PANMI; Putative WRKY transcription factor 70
STRINGPavir.Ca02012.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76563549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-25WRKY DNA-binding protein 46