PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG447600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 179aa    MW: 18953.9 Da    PI: 12.3853
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG447600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.39.2e-09142172135
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgk 35 
                          s+y+GVr+++ +g+W+A+Ir p     +   r +l++
  Pavir.3KG447600.1.p 142 SKYHGVRRRP-WGKWAAQIRNP-----HraVRKWLET 172
                          89********.**********6.....3368888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.79E-6142170IPR016177DNA-binding domain
PfamPF008473.0E-4142170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-10143172IPR001471AP2/ERF domain
PROSITE profilePS5103212.826143178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MNLVKLIFAC QRAGLVAVPI SPPDPSNLGT PAARRHLLRT RGERTARGSR RSCGGRGSRA  60
GARLPAAEVV PPAVFAPAPA LAVACAGCGA DSGQVRHYAG RSELLAAAGI GSSSVNKDGG  120
ECSASHVATG GVGKRRRRMR MSKYHGVRRR PWGKWAAQIR NPHRAVRKWL ETAPRLRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133149KRRRRMRMSKYHGVRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG447600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.11e-10related to AP2 6