PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG448700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 177aa    MW: 18392 Da    PI: 11.9893
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG448700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.56.4e-053989254
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                         rr    + rrRR+r    ++eL  +lP+ +   +s++ +   i+e A+  ++ L
  Pavir.3KG448700.1.p 39 RRRDRDAHRRRRARASALYAELGAMLPSlP---TSRRATQEKIVEAATTRVRAL 89
                         66677889********************66...9999*********99877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.98E-63699IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.1123789IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-43997IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MAAAAAAEGL PLELSLDRTV AAPASATVTA AESAVERRRR RDRDAHRRRR ARASALYAEL  60
GAMLPSLPTS RRATQEKIVE AATTRVRALE GTAAALERGP PRAARGGPVP RDRDRLGAAA  120
GALRRVVEAF ERRGARVLVA TMARRGGGEE SGAAVVAAAA APDVVEMIRA DIASIN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13541ERRRRRD
23649RRRRRDRDAHRRRR
34049RDRDAHRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG448700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808654.12e-34uncharacterized protein LOC112886855
TrEMBLA0A3L6T2P31e-33A0A3L6T2P3_PANMI; Uncharacterized protein
STRINGPavir.Ca02343.1.p4e-54(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91411931