PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG464600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 214aa    MW: 23713.8 Da    PI: 5.8851
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG464600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.1e-101261651054
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          + RR+riNs++  L+el+P+      kK++ +++L +Av+Y+k L
  Pavir.3KG464600.1.p 126 KMRRERINSRLRILQELIPNG-----KKVDISTMLDEAVQYVKFL 165
                          89*****************98.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-12114173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.297116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-10117169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-8122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.14E-10125170No hitNo description
PfamPF000108.3E-7126165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MEAECTSYWR SVDAISEESE MIEHLQSLLW SSNDVNLVPG LCSSNVPYSL PGGSPFCIND  60
NENSALVRSP PYVDVETLAS THGEKVGSKR KGETHKENHG VKGHAAPLEP GGCKKSKASS  120
QSCYAKMRRE RINSRLRILQ ELIPNGKKVD ISTMLDEAVQ YVKFLHMQIK GPYFLLDFVD  180
AQLLSSDELW MYSPLAYDSV NMGMHLNSSS VQE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG464600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809609.11e-115transcription factor bHLH84-like
TrEMBLA0A2S3HE591e-114A0A2S3HE59_9POAL; Uncharacterized protein
TrEMBLA0A2T7EHD81e-114A0A2T7EHD8_9POAL; Uncharacterized protein
STRINGPavir.Ca02388.1.p1e-158(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145082123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.19e-32bHLH family protein