PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG464600.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 203aa MW: 22475.4 Da PI: 6.3919

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG464600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.6e-09	127	166	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + RR+riNs++ L+el+P+ kK++ +++L +Av+Y+k L Pavir.3KG464600.2.p 127 QMRRERINSRLRILQELIPNG-----KKVDISTMLDEAVQYVKFL 166 78***************98.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.383	117	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-12	122	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-7	123	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.6E-11	127	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-6	127	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.13E-9	129	171	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MEAECTSYWR SVDAISEESE MIEHLQSLLW SSNDVNLVPG LCSSNVPYSL PGGSPFCIND 60 NENSALVRSP PYVDVETLAS THGEKVGSKR KGETHKENHG VKGHAAPLEP GGCKKSKASS 120 QSCYAKQMRR ERINSRLRIL QELIPNGKKV DISTMLDEAV QYVKFLHMQI KLLSSDELWM 180 YSPLAYDSVN MGMHLNSSSV QE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG464600.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809609.1	1e-117	transcription factor bHLH84-like
TrEMBL	A0A2S3HE59	1e-116	A0A2S3HE59_9POAL; Uncharacterized protein
TrEMBL	A0A2T7EHD8	1e-116	A0A2T7EHD8_9POAL; Uncharacterized protein
STRING	Pavir.Ca02388.1.p	1e-143	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.1	4e-34	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.3KG464600.2.p