PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG465900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 493aa    MW: 52325.6 Da    PI: 7.7243
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG465900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.31.2e-31233289259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          dDgynWrKYGqK+vkgs++prsYY+Ct+++Cpv+kkve+++ d+++ ei+Y+g+Hnh+
  Pavir.3KG465900.1.p 233 DDGYNWRKYGQKVVKGSDCPRSYYKCTHPNCPVRKKVEHAE-DGQISEIIYKGKHNHQ 289
                          8**************************************99.***************8 PP
2WRKY1084.6e-34389447159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k++er+++dpk+v++tYeg+Hnhe
  Pavir.3KG465900.1.p 389 LDDGYRWRKYGQKVVKGNPHPRSYYKCTFAGCNVRKHIERASSDPKAVITTYEGKHNHE 447
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-28229291IPR003657WRKY domain
SuperFamilySSF1182902.62E-25231291IPR003657WRKY domain
SMARTSM007743.4E-34232290IPR003657WRKY domain
PROSITE profilePS5081123.652233291IPR003657WRKY domain
PfamPF031061.1E-24233289IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.8E-37375449IPR003657WRKY domain
SuperFamilySSF1182902.88E-29381449IPR003657WRKY domain
PROSITE profilePS5081137.413384449IPR003657WRKY domain
SMARTSM007747.0E-40389448IPR003657WRKY domain
PfamPF031064.0E-26390447IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MSARPPPPPR PHLALPPRSA AESLFTGAGD ASPGPLTLAS ALFPSDADAG GDGASSGAPG  60
AGSFTQLLTG SLGQPPPPQQ QRQQQHEAAE RGRGGGVARA GPALSVAPPA SAASGASVFT  120
VPPGLSPSGL LDSPGLLFSP AMGGFGMSHQ QALAQVTAQA SHSPLRMFDH IEQPSFSAAS  180
ASSRDLQHMT SGANMTGMPD MAITIANNDN ASLQSAEASQ RYQVNAPVDK PADDGYNWRK  240
YGQKVVKGSD CPRSYYKCTH PNCPVRKKVE HAEDGQISEI IYKGKHNHQR PPNKRAKDGN  300
SSAADQNDQS NDTTSGLSGA KRDQDAIYGM SEQVSGLSDG DDMDDGESRP HEADDADNDS  360
KRRNIQISSQ RTLSEPKIIV QTTSEVDLLD DGYRWRKYGQ KVVKGNPHPR SYYKCTFAGC  420
NVRKHIERAS SDPKAVITTY EGKHNHEPPV GRRGNQNAGM SQQKGQASIS SNQHYSNTNQ  480
MPIGILQFKS EQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-38223449877Probable WRKY transcription factor 4
2lex_A1e-38223449877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.5890.0callus| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG465900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807657.10.0probable WRKY transcription factor 3
TrEMBLA0A2S3HE780.0A0A2S3HE78_9POAL; Uncharacterized protein
STRINGPavir.Ca02393.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-105WRKY DNA-binding protein 3