PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG473600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 213aa    MW: 24956.3 Da    PI: 8.0747
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG473600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.69.5e-107514369128
                  NAM  69 atgkrknr.atksgyWkatgkd.kevlskkgel..........vglkktLvfykgrapkgektdWvmheyrl 128
                          ++++r++   t sgyWk++  +  ++ sk+ge+           gl +tL fy   +++g+ktdWv+hey+l
  Pavir.3KG473600.1.p  75 QKDQRSSSlRTYSGYWKEKEDEfIAIRSKRGEVssspssppsyQGLGRTLEFY---EHNGTKTDWVIHEYNL 143
                          2333444435889****76553145555555557888999999**********...78999*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510059.56817162IPR003441NAC domain
PfamPF023652.5E-757143IPR003441NAC domain
SuperFamilySSF1019413.53E-1260162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
METDGAAATL RIINDAMEKV RRRSLRDWSW PIKVAMEDMR SGRWEERSKL YRMLQANACL  60
AEVDPWDLPP QFATQKDQRS SSLRTYSGYW KEKEDEFIAI RSKRGEVSSS PSSPPSYQGL  120
GRTLEFYEHN GTKTDWVIHE YNLLDHHLII QEDMVVRKVF NKKHTNRNPP CFRYCDTIPE  180
YNRQTLVNDS KFHPLLDNIP SVPKYILSFL DL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG473600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807167.14e-71uncharacterized protein LOC112885745
TrEMBLA0A2S3HEW38e-70A0A2S3HEW3_9POAL; Uncharacterized protein
STRINGPavir.J14337.1.p4e-75(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4105423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.21e-08NAC domain containing protein 41