PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG485200.4.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 224aa    MW: 23807.8 Da    PI: 11.0969
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG485200.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like986.8e-3179134156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k+r+ W+peLH rFv a+++LGG+++AtPk+i++lmkv+gLt+++vkSHLQkYRl+
  Pavir.3KG485200.4.p  79 KARRSWSPELHCRFVAALQRLGGAQVATPKKIRQLMKVDGLTNDEVKSHLQKYRLH 134
                          689***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.43576136IPR017930Myb domain
SuperFamilySSF466891.08E-1676137IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-2877137IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-2579134IPR006447Myb domain, plants
PfamPF002493.2E-781132IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MAFFVSGAFM PPALAGSPDD AAEKPAALPV PDLTLSSPAI DAACPAVSSA TSSAVTDGGA  60
ATTQRLLRQR QQQQAQPQKA RRSWSPELHC RFVAALQRLG GAQVATPKKI RQLMKVDGLT  120
NDEVKSHLQK YRLHTRRASP SDGGDLQALA ADLSAVPEQQ YTASQHSTSQ SVSPQGSLTA  180
DGVEPGHVGD RRGQLRRRRG EGRLVRELER LRRAAARTKA SSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-1479132154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-1479132154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-1479132154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-1479132154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.218550.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG485200.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809801.13e-70transcription factor NIGTH1-like
TrEMBLA0A3L6R6G71e-71A0A3L6R6G7_PANMI; Putative transcription factor GLK2 isoform X1
STRINGPavir.J16844.1.p1e-158(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.12e-29G2-like family protein