PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG487300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 139aa MW: 15416.5 Da PI: 9.2328

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG487300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	52.2	1.3e-16	26	55	6	35
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCka 35 +cprC s++tkfCy+nny+++qPr+fC+a Pavir.3KG487300.1.p 26 ERCPRCASRDTKFCYFNNYNTAQPRHFCRA 55 68**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.1E-12	26	61	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	6.0E-9	28	52	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MEAAAALHMQ SPVPLPLPPP AAAGRERCPR CASRDTKFCY FNNYNTAQPR HFCRASSPRR 60 CRPRCTTAAR RTCSCDTYTL VASDVKLAPD ASRHRSINEL SDHDHLSLLW PLLFRTRNID 120 KSFVSLSRAE LGVDQSGS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG487300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28810.1	7e-11	Dof family protein

Link Out ? help Back to Top
Phytozome	Pavir.3KG487300.1.p