PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG487800.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 469aa    MW: 53039.8 Da    PI: 10.0277
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG487800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.11.2e-163791799
                         E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                         ++p+kf++++   ++ s +++le ++g++++v++   +  ++ vl++GW++F  a +Lk gD +vF+ +++s f  +v++f+ 
  Pavir.3KG487800.2.p  3 TIPRKFVANIR--EHLSEEVKLEAPDGKTYTVQV--AREHNELVLRSGWSDFSCAYELKLGDLLVFRNSDKSHF--KVRIFDP 79
                         79*****8886..458889***************..*******************************5444666..9999986 PP
2B341.52.3e-132082841290
                          HTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3  12 ksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                           sg+l ++k++a +h  +k  s  ++l +++g ++W ++l +  + ++ +  ++GW +F ++n+L+egD+++F+ ++++++
  Pavir.3KG487800.2.p 208 VSGILAISKDYAMKHLANK--SGIIQLSQLDGsKTWAINLDI--TTKGdCAVSTGWMDFIRDNKLREGDICIFQPSKSKNG 284
                          45789**********6664..4489****9999*******44..3333377889********************8776554 PP
3B3543e-17358450898
                          -HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
                   B3   8 sdvlks..grlvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                          s++ ++  ++l + +++a+++   ++es+t++l+ +      +We  l  r + +ry+l++GW++Fv++n+Lk gD ++F l+ + ++ +
  Pavir.3KG487800.2.p 358 SNTARNnmCLLEFGRDYATKY--LPPESQTMRLRRPGPfkdGTWEAVL--RVQNRRYILGRGWRQFVDDNKLKPGDLCLFNLMTNtKQLT 443
                          333333224445555556555..456888*****9876777*******..999999***************************888**** PP

                          .EEEEE- CS
                   B3  92 lvvkvfr 98 
                          ++v+++r
  Pavir.3KG487800.2.p 444 MNVHIIR 450
                          ****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.775180IPR003340B3 DNA binding domain
SMARTSM010191.9E-5180IPR003340B3 DNA binding domain
CDDcd100171.19E-18378No hitNo description
SuperFamilySSF1019364.71E-19382IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.7E-20382IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-13378IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-15190282IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-16191282IPR015300DNA-binding pseudobarrel domain
CDDcd100171.70E-11196276No hitNo description
PROSITE profilePS5086311.575197294IPR003340B3 DNA binding domain
SMARTSM010192.2E-5199291IPR003340B3 DNA binding domain
PfamPF023622.7E-10205284IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-19343450IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-20344450IPR015300DNA-binding pseudobarrel domain
CDDcd100175.84E-16349450No hitNo description
SMARTSM010194.2E-5351452IPR003340B3 DNA binding domain
PROSITE profilePS5086312.337353452IPR003340B3 DNA binding domain
PfamPF023623.7E-15357450IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MQTIPRKFVA NIREHLSEEV KLEAPDGKTY TVQVAREHNE LVLRSGWSDF SCAYELKLGD  60
LLVFRNSDKS HFKVRIFDPS GCEKELSCVL MDGGPCVQER KVSNGNHMQS STGKRFAIGN  120
PSVSKKTSKT NPTDSPSQKK NEHVPSSEGT QKPTNSGGGV QKRTKSCIVL PTGYDMTSEQ  180
RAQITTLEQK IQPEPPFYIT AMHRRSVVSG ILAISKDYAM KHLANKSGII QLSQLDGSKT  240
WAINLDITTK GDCAVSTGWM DFIRDNKLRE GDICIFQPSK SKNGVTLIYH PLEENHRLQP  300
LGHIPSTKTM SPRHGVPKPP YILPWRRTLS DQQMSELDKK VEAIQSKIPI YVAVMHNSNT  360
ARNNMCLLEF GRDYATKYLP PESQTMRLRR PGPFKDGTWE AVLRVQNRRY ILGRGWRQFV  420
DDNKLKPGDL CLFNLMTNTK QLTMNVHIIR LRERSTTRLV DRHQSCSC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG487800.2.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808338.10.0B3 domain-containing protein LOC_Os12g40080-like isoform X1
RefseqXP_025808339.10.0B3 domain-containing protein LOC_Os12g40080-like isoform X1
SwissprotQ2QMT61e-140Y1208_ORYSJ; B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A3L6T2R00.0A0A3L6T2R0_PANMI; Uncharacterized protein
STRINGPavir.Cb00423.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-22B3 family protein