PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG487900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 498aa    MW: 56110.5 Da    PI: 8.1879
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG487900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.87.4e-17511321199
                          HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          ++ +++++p kfa+++ g+   s  ++le ++g+ ++v++  ++  ++ v++ GW  F++a +L++gD++vF+++g+s f  +v +f++
  Pavir.3KG487900.1.p  51 FQ-QQMIVPEKFAKNFRGQ--ISGVVKLEAPDGNLYKVNV--SQDLNKLVFRYGWGAFCSAYELEQGDMLVFRYSGDSHF--KVLIFDQ 132
                          44.46999*****988777..5669***************..999999****************************9999..9999987 PP
2B336.11.2e-11253340595
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                           +++ +l++g +v+ k++ +++   ++e++ +tl + + +r+ + +l  + + ++ y++++GW++ +++++L++gD + F+ +  se++ 
  Pavir.3KG487900.1.p 253 NMNKTNLSNGYMVICKDYSDKYL--PHEDQAITLCHpPGSRKRDANL--KISAEGaYIFSNGWRSLARDHELQDGDACAFEAST-SEGRV 337
                          678999*************9995..2345679999945559999999..5555555*************************654.66655 PP

                          EEE CS
                   B3  93 vvk 95 
                          +++
  Pavir.3KG487900.1.p 338 TLS 340
                          544 PP
3B348.91.2e-15398476685
                          ..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   6 tpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          +++    ++ +++ k+fa eh     + ++t++l+ +    sWe +l++r+ ++ ++l++GWk+Fv++n L++gD ++F+  
  Pavir.3KG487900.1.p 398 VTAKKRGNDSMCFNKDFAMEHlP---RVPQTVRLRRPGVsCSWEAQLQVRNEGKVHLLRRGWKQFVDDNALRQGDLCLFQPL 476
                          555666778899******99943...34669*****6655***************************************943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-2336135IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-2337135IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.25240133IPR003340B3 DNA binding domain
CDDcd100176.67E-2341131No hitNo description
SMARTSM010194.6E-1143133IPR003340B3 DNA binding domain
PfamPF023624.4E-1549132IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-16242342IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-16244341IPR015300DNA-binding pseudobarrel domain
CDDcd100171.91E-10248343No hitNo description
PROSITE profilePS5086310.503249345IPR003340B3 DNA binding domain
SMARTSM010197.3E-11250345IPR003340B3 DNA binding domain
PfamPF023629.4E-10253340IPR003340B3 DNA binding domain
PROSITE profilePS5086311.42393497IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-15395495IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-16395495IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.5E-8397497IPR003340B3 DNA binding domain
PfamPF023627.6E-13397477IPR003340B3 DNA binding domain
CDDcd100176.05E-12406473No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MASQDHEVHG MSAHEMSGNC CKRCSHCDSH YYWHHLDDRQ KHFFKLMLGD FQQQMIVPEK  60
FAKNFRGQIS GVVKLEAPDG NLYKVNVSQD LNKLVFRYGW GAFCSAYELE QGDMLVFRYS  120
GDSHFKVLIF DQSGCEKEFF RVVMNPTCSV RRRGIPHEQS PSGEGLARHR TDELNHSRKA  180
SKMTPADSPS QRSTEEMAYP EDTVKPMDSG VFQTSSESRA ILAKGCILTS AQKAKLDAFQ  240
KKIRPGNPLY VTNMNKTNLS NGYMVICKDY SDKYLPHEDQ AITLCHPPGS RKRDANLKIS  300
AEGAYIFSNG WRSLARDHEL QDGDACAFEA STSEGRVTLS VHPLQGSYNP PESGASAPLE  360
LDIHSGYMVS KHTNLTPEQK KRVLEKLREI QAKTFVFVTA KKRGNDSMCF NKDFAMEHLP  420
RVPQTVRLRR PGVSCSWEAQ LQVRNEGKVH LLRRGWKQFV DDNALRQGDL CLFQPLGGGG  480
CEDDGELAMN VHILRGH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG487900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806972.10.0B3 domain-containing protein LOC_Os12g40080-like
TrEMBLA0A2T7EIN70.0A0A2T7EIN7_9POAL; Uncharacterized protein
STRINGPavir.Ca02537.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-31B3 family protein