PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG488000.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 353aa    MW: 40607.8 Da    PI: 8.5537
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG488000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.97.9e-1828115199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffk +     +++g +++p +fa++++   ++   + l+ +sg++W++ +  +k++++ +l + Wk+Fvka++L+e+D +vF+ +g  +f
  Pavir.3KG488000.3.p  28 FFKLM--TGDFANG-ISIPERFAKNFN-R-TG--SIDLKAPSGETWNIGI--DKHDDELFLVSRWKDFVKAHRLRENDLLVFTCSG--NF 106
                          55655..4455565.9*******6665.2.35..59**************..*******************************766..56 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                          ++ v++f++
  Pavir.3KG488000.3.p 107 SFDVMIFEA 115
                          668998876 PP
2B339.88.3e-13245343199
                          EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkld 85 
                          f++vl  s+v ++ + l++p +f+++h  +++   ++tl    +  +W vk+ y  + ++   y      + Fv++n+L+egD++ F+l+
  Pavir.3KG488000.3.p 245 FVTVLQMSHVRRKsNFLIFPSRFVADHL-DTRL-HEITLVRpNRKDKWCVKYAYAHGAQGirnY----TFSMFVQENRLREGDICAFELM 328
                          5566666666655478899*****9994.3334.488888835669******997777773334....567*****************99 PP

                          SS.SEE..EEEEE-S CS
                   B3  86 gr.sefelvvkvfrk 99 
                          +  ++ +++v+++rk
  Pavir.3KG488000.3.p 329 KGaRRVTMTVHAIRK 343
                          777999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.77425116IPR003340B3 DNA binding domain
CDDcd100173.32E-1727113No hitNo description
Gene3DG3DSA:2.40.330.108.7E-1827117IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-1827120IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-1428115IPR003340B3 DNA binding domain
SMARTSM010191.0E-1228116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-16237342IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-14238342IPR015300DNA-binding pseudobarrel domain
CDDcd100175.78E-13243342No hitNo description
PfamPF023629.5E-12245343IPR003340B3 DNA binding domain
SMARTSM010195.3E-8245344IPR003340B3 DNA binding domain
PROSITE profilePS508639.756246342IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MAEKGCESCR KWQEHYYWEH MDVTKIRFFK LMTGDFANGI SIPERFAKNF NRTGSIDLKA  60
PSGETWNIGI DKHDDELFLV SRWKDFVKAH RLRENDLLVF TCSGNFSFDV MIFEASGYEK  120
VSSLLGNSTG TDMRKRFDDM ADRGKPGKQA EHYALTHSED ATHLAGFPHH ACTSKKSGSR  180
NSRQMPESSN SSSDHVKHDA ICKEESDEEC TNSNYYYSRI ANRLSDEEKE KITSLASIRP  240
DNPAFVTVLQ MSHVRRKSNF LIFPSRFVAD HLDTRLHEIT LVRPNRKDKW CVKYAYAHGA  300
QGIRNYTFSM FVQENRLREG DICAFELMKG ARRVTMTVHA IRKVDGWFVR LG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.50950.0callus| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG488000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808342.10.0B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT21e-123Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A2T7EIP10.0A0A2T7EIP1_9POAL; Uncharacterized protein
STRINGPavir.Ca02538.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-31B3 family protein