PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG492100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 746aa    MW: 85828.7 Da    PI: 6.3654
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG492100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR139.22.3e-12891981090
                 FAR1  10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkk..............................tekerrtraetrtgCkaklkvk 69 
                          +GFs+ +s ++ s  ++e  k +fvC++eg+ ++ k++                                ++r++ +  +t+Ck +++vk
  Pavir.3KG492100.1.p  89 IGFSIHTSCTHLSGVTREQNKVQFVCNREGRGRKPKEDqaaaksddsnvddncesddgndnaekkkpdGGTKRKRGKMLHTDCKGRMVVK 178
                          6************999**************9999888889*********************999999877788899999*********** PP

                 FAR1  70 kekdgkwevtkleleHnHela 90 
                          +   +kw+v+ +  +HnH+l+
  Pavir.3KG492100.1.p 179 LI-ANKWHVIFFAPDHNHDLV 198
                          **.99**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1089198IPR004330FAR1 DNA binding domain
PfamPF105514.6E-34322414IPR018289MULE transposase domain
PROSITE profilePS509669.198581617IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MDLNEFPPEF DYDFLDESIA NPSYCTQAPL CDASLRGSEH NNAGNDLYNQ NGNDNQNADA  60
CSLNNPEDAT ASDQLVLDVT EEVEEDIWIG FSIHTSCTHL SGVTREQNKV QFVCNREGRG  120
RKPKEDQAAA KSDDSNVDDN CESDDGNDNA EKKKPDGGTK RKRGKMLHTD CKGRMVVKLI  180
ANKWHVIFFA PDHNHDLVHK PSLKKFIRSH KGIPKPEKDF IALLHGCNLS SGRIMQLMNE  240
FYGSAQLVPY EGKDVSNFRS TIQRTEKYKD MQETLDYFKK LEQQDAEFFY KIKVDAAHKV  300
ECLFWVDGAA RHAYIESYSD LVSFDATYMT NMYDMPFAPF IGINRHGQSF MLGCAFIRDE  360
KIPSYVWLFE TFLEAMQGKA PVSIITDQDA AMRCAIAQIF PNTNHRNCRW HIMDKFSGTI  420
GPILAADEKL EEDFKECLNY TVTPDEFESK WSAMVSNYYM HCFYPFLQST QRSEWFNSVL  480
KKYVNPNMSV LHFVRQYQNI QDKCLVAQDG HDFRTDDRER RRWSKYPIEK HTSAVYTKNL  540
FYRFSKEFEK TAEYDVRSEG QFQYLLEPNN KFVNGYGKRT YIMTAVVEEE SYYCECSKFD  600
RDGMFCCHIM KILTRLGVKT IPQRYILKMW TQEAIPENEN ANPNAYVPAD FIARGMPLNN  660
KKTLWFTNLS TAFAGLAVEG CASKETYTIM DGHIKMMRAE IDEVKQRKKS NARKVRGSKR  720
APSNVLSEHD TNVNENTAST GIIFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG492100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311908.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A3L6S9Q10.0A0A3L6S9Q1_PANMI; Uncharacterized protein
STRINGPavir.Ca02446.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-79FAR1-related sequence 5