PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG494800.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 321aa MW: 32327.1 Da PI: 9.0815

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG494800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121	4.3e-38	94	151	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +l+cprCdstntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+n k+s Pavir.3KG494800.2.p 94 TLRCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNTKRS 151 679***************************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-32	76	147	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.385	95	149	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-31	95	149	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	97	133	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MQMQQQQQPP LQCLLGGGGG GGGSDHHHLM PPPSGLAPLP GGPADTAASA PAGGNSSSSM 60 QAPAGAGAGA QPRPVVSMAE RARLARVPLP EPGTLRCPRC DSTNTKFCYF NNYSLSQPRH 120 FCKACRRYWT RGGALRNVPV GGGCRRNTKR SSKKSSRGGG AGATAATSSS STTSTSTTAT 180 TTSAAMAAAE AIASMQAQLP HLGLPPAAAA AALEASLEGY HHYLPFQMQP QFLQQVGLHG 240 YHFADDGSGV LADGFPRGVV ASGLLAQLAA VKMEEHSSGG GGGAVAAHEQ SYWPGSTGGG 300 GGWPAEFLSG FSSSSSGNVL *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.20062	0.0	stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG494800.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582419	0.0	KC582419.1 Sorghum bicolor dof28 protein (dof28) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008668091.1	1e-147	dof zinc finger protein DOF2.2 isoform X1
TrEMBL	A0A317Y8M1	1e-151	A0A317Y8M1_MAIZE; Dof zinc finger protein DOF5.1
TrEMBL	B6U2U9	1e-151	B6U2U9_MAIZE; Uncharacterized protein
STRING	Pavir.Ca02598.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	1e-39	Dof family protein

Link Out ? help Back to Top
Phytozome	Pavir.3KG494800.2.p