PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG529200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 146aa    MW: 16261.2 Da    PI: 8.7753
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG529200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.5e-094278134
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kg 34
                         rg+WT +Ed+ lv++++ +G g+W++ ar  g   ++
  Pavir.3KG529200.1.p 42 RGPWTVDEDLTLVNYIACHGEGRWNSLARATGklaLN 78
                         89***************************99955554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.26337122IPR017930Myb domain
SuperFamilySSF466892.39E-123973IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-1840111IPR009057Homeodomain-like
SMARTSM007172.5E-841120IPR001005SANT/Myb domain
CDDcd001671.65E-644118No hitNo description
PfamPF139213.3E-945131No hitNo description
SuperFamilySSF466892.39E-12102128IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-9112145IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MAEPQRTRSE SSSPGAPVEL DDDHGLPGGA AQDQEEQLEL RRGPWTVDED LTLVNYIACH  60
GEGRWNSLAR ATGKLALNKS ARTAAGHLHP WLIARAFHTH AGLKRTGKSC RLRWLNYLRP  120
DVRRGNITAD EQLLILDLHT RWGNR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG529200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0697442e-54BT069744.1 Zea mays full-length cDNA clone ZM_BFb0226N11 mRNA, complete cds.
GenBankKJ7276382e-54KJ727638.1 Zea mays clone pUT5565 MYB transcription factor (MYB100) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810240.12e-62transcription factor JAMYB-like
SwissprotQ2QZJ83e-40JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLA0A2S3HEM35e-61A0A2S3HEM3_9POAL; Uncharacterized protein
TrEMBLA0A2T7EI175e-61A0A2T7EI17_9POAL; Uncharacterized protein
TrEMBLA0A3L6RBX25e-61A0A3L6RBX2_PANMI; Uncharacterized protein
STRINGPavir.Cb00499.1.p5e-60(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.13e-38myb domain protein 24
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]