PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG529700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 359aa    MW: 38469.7 Da    PI: 10.9309
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG529700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.42.2e-31292349359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeHnh+
  Pavir.3KG529700.1.p 292 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEGEHNHT 349
                          9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.0E-17242288IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.0E-34278351IPR003657WRKY domain
PROSITE profilePS5081131.525285351IPR003657WRKY domain
SuperFamilySSF1182902.22E-27288351IPR003657WRKY domain
SMARTSM007744.4E-38290350IPR003657WRKY domain
PfamPF031064.9E-27292348IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEEVEVANRA AVESCHRVLT LLSQSQQQDP ALLKSVASVM GEACAKFRKV TALLGNGGST  60
GHARGRFSRR GRPAGLFTLK SLLGSSSDTR SELMPSTAAA PSPSSSYAQL RARISGAPDP  120
RGLDLASSSG KSGTHPFGAP KMVQPLSVQF QIGNVAHRYP FHQQPSRQKL QAEMFRRSNS  180
GISLKFDSPS PSGGAGTMSS ARSFMSSLSM EGSVASLDGK RPFHLVGAPV ASDSADANRV  240
PKRRCTGRGQ DGTGKCATTG RCHCSKRSRK LRIKRSIKVP AISNKIADIP PDEYSWRKYG  300
QKPIKGSPHP RGYYKCSSVR GCPARKHVER CVDDPAMLIV TYEGEHNHTR PPAQSVQT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-22278353276WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238243RVPKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.294000.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: More abundant in apices and young leaf primordia than in fully expanded leaf tissues. {ECO:0000269|PubMed:16243907}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG529700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809630.10.0protein WRKY1-like isoform X1
SwissprotQ32SG44e-86WRKY1_MAIZE; Protein WRKY1
TrEMBLA0A2T7EIW20.0A0A2T7EIW2_9POAL; Uncharacterized protein
TrEMBLA0A2T8KLW40.0A0A2T8KLW4_9POAL; Uncharacterized protein
STRINGPavir.J38176.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.14e-62WRKY DNA-binding protein 39