PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG529900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 244aa    MW: 25488.8 Da    PI: 10.4888
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG529900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.25.3e-1772120355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +ahn  E+rRR++iN+++ +L++l+P +    + K + a++L ++++Y+ksLq
  Pavir.3KG529900.1.p  72 EAHNLTEKRRRHKINERLKTLQQLVPGC----DDKSNQASTLDQTIQYLKSLQ 120
                          58*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-1966130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.64169119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-1971127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-1472120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.65E-1672124No hitNo description
SMARTSM003531.1E-1475125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAAWLRTIVR GEELAVNDDG GGRDVPAEKG SSDNASTSTT DSKEKHPAVT EGMQEMRQPS  60
AGGSSRRSHY GEAHNLTEKR RRHKINERLK TLQQLVPGCD DKSNQASTLD QTIQYLKSLQ  120
HHVQAMSIGP ARPAAAAVPV VPPQYAPPGA PPVMPAAPVV LAASAQTTMV PFGAMLQTMP  180
HYPAAVPVMM PAPAAPLSYS YPAAPPPRAA AVAPGGAGSS SASHRHGSSS RKGKGGRSLR  240
HKH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG529900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806979.17e-94putative transcription factor bHLH056
TrEMBLA0A2T7EIW93e-95A0A2T7EIW9_9POAL; Uncharacterized protein
STRINGPavir.Ca02790.1.p1e-121(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.16e-19phytochrome interacting factor 3-like 5