PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG530600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 204aa    MW: 21832.9 Da    PI: 4.7388
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG530600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.32.1e-15130183457
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                           k+ rr+ +NRe+Ar sR+RK+a +  Le  v +L++eN +L k+l  ++++++
  Pavir.3KG530600.1.p 130 TKKMRRMLSNRESARQSRKRKQAHLTDLESQVSKLTSENASLLKRLADMTQKYK 183
                          6999***********************************999966666665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.9E-16127191IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.151129181IPR004827Basic-leucine zipper domain
PfamPF001702.4E-13130183IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.61E-12131182No hitNo description
Gene3DG3DSA:1.20.5.1701.8E-13131183No hitNo description
CDDcd147021.16E-17132182No hitNo description
PROSITE patternPS000360134149IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MAGAGAGAAA AAAADDDVVE VSCGGDGRDP GAYAAVLKRR LDLYCAAVAK SMEAKSQESS  60
LGYPNSQASD TSQLISQASF DDDGDGATLV INSNIIDHED FRGNPANNGT SKEQSDDDGD  120
LEENTDPANT KKMRRMLSNR ESARQSRKRK QAHLTDLESQ VSKLTSENAS LLKRLADMTQ  180
KYKDATLDNR NLTVDVETMR RKV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145150SRKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.55324e-51callus| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG530600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0421031e-177BT042103.1 Zea mays full-length cDNA clone ZM_BFb0133G19 mRNA, complete cds.
GenBankKJ7275041e-177KJ727504.1 Zea mays clone pUT5363 bZIP transcription factor (bZIP111) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805357.11e-134light-inducible protein CPRF2-like
SwissprotQ990904e-27CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A2T7EJ131e-134A0A2T7EJ13_9POAL; Uncharacterized protein
STRINGPavir.Ca02738.1.p1e-143(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75952943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.32e-25bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]