PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG530600.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 160aa MW: 18044.1 Da PI: 6.5096

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG530600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49	1.3e-15	86	140	4	58
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 k+ rr+ +NRe+Ar sR+RK+a + Le v +L++eN +L k+l ++++++ Pavir.3KG530600.2.p 86 TKKMRRMLSNRESARQSRKRKQAHLTDLESQVSKLTSENASLLKRLADMTQKYKD 140 6999***********************************9999666666665554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.9E-16	83	147	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.151	85	137	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.9E-14	86	139	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.6E-14	87	139	No hit	No description
SuperFamily	SSF57959	1.06E-12	87	138	No hit	No description
CDD	cd14702	7.87E-19	88	138	No hit	No description
PROSITE pattern	PS00036	0	90	105	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MCGLESIQAL LQHSNHQPPL CFTYFYCHLL LSLIPHTDDG DGATLVINSN IIDHEDFRGN 60 PANNGTSKEQ SDDDGDLEEN TDPANTKKMR RMLSNRESAR QSRKRKQAHL TDLESQVSKL 120 TSENASLLKR LADMTQKYKD ATLDNRNLTV DVETMRRKV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	101	106	SRKRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.5532	3e-51	callus\| leaf\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in developing seeds from 10 to 30 days after flowering (DAF). {ECO:0000269\|PubMed:11133985}.
Uniprot	TISSUE SPECIFICITY: Expressed in developing endosperm, especially in aleurone layer cells. {ECO:0000269\|PubMed:7919992}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:7919992}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG530600.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805357.1	5e-78	light-inducible protein CPRF2-like
Swissprot	Q6ETX0	3e-27	RSBZ3_ORYSJ; bZIP transcription factor RISBZ3
TrEMBL	A0A2T7EJ00	1e-88	A0A2T7EJ00_9POAL; Uncharacterized protein
TrEMBL	A0A2T7EJ03	6e-89	A0A2T7EJ03_9POAL; Uncharacterized protein
STRING	Pavir.Ca02738.1.p	9e-79	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	3e-23	basic leucine zipper 9

Link Out ? help Back to Top
Phytozome	Pavir.3KG530600.2.p

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development. Plant Cell, 1994. 6(9): p. 1277-87 [PMID:7919992]