PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG530600.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 123aa    MW: 13836.2 Da    PI: 5.9067
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG530600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.53.8e-1086118436
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvk 36 
                           k+ rr+ +NRe+Ar sR+RK+a +  Le  v 
  Pavir.3KG530600.3.p  86 TKKMRRMLSNRESARQSRKRKQAHLTDLESQVS 118
                          6999*************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS502178.58885122IPR004827Basic-leucine zipper domain
PfamPF001701.4E-886118IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.94E-887119No hitNo description
Gene3DG3DSA:1.20.5.1703.5E-887119No hitNo description
CDDcd147021.26E-1288118No hitNo description
PROSITE patternPS00036090105IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MCGLESIQAL LQHSNHQPPL CFTYFYCHLL LSLIPHTDDG DGATLVINSN IIDHEDFRGN  60
PANNGTSKEQ SDDDGDLEEN TDPANTKKMR RMLSNRESAR QSRKRKQAHL TDLESQVSNR  120
DR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101106SRKRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG530600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805357.13e-47light-inducible protein CPRF2-like
TrEMBLA0A2T7EJ007e-58A0A2T7EJ00_9POAL; Uncharacterized protein
TrEMBLA0A2T7EJ034e-58A0A2T7EJ03_9POAL; Uncharacterized protein
STRINGPavir.Ca02738.1.p7e-49(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.17e-11basic leucine zipper 9