PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG553300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family YABBY
Protein Properties Length: 199aa    MW: 22053.2 Da    PI: 9.5086
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG553300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY235.99.2e-7351703170
                YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesa 92 
                          +  ++++vCyv+CnfCnt+lavsvP +s++++vtvrCGhC++llsvnl+  ++ l+ +++ + +   + +++ k ++ n +  +  ++s+
  Pavir.3KG553300.1.p   5 IAPAADHVCYVHCNFCNTVLAVSVPGNSMLNIVTVRCGHCANLLSVNLRALMHSLPEQQD-QLQ-LFDSQKNIKAHGINGSHLEFGSSSS 92 
                          67789**************************************************99886.333.3445566666666666655555555 PP

                YABBY  93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                          +   +++  ++ne+  ++++    rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl
  Pavir.3KG553300.1.p  93 KFRLPMMYSPQNEHLLLQEQTLSARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 170
                          555555333444444444444489****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046908.7E-739170IPR006780YABBY protein
SuperFamilySSF470953.01E-8115164IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.4E-5117164IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MSVQIAPAAD HVCYVHCNFC NTVLAVSVPG NSMLNIVTVR CGHCANLLSV NLRALMHSLP  60
EQQDQLQLFD SQKNIKAHGI NGSHLEFGSS SSKFRLPMMY SPQNEHLLLQ EQTLSARPPE  120
KRQRVPSAYN RFIKEEIRRI KANNPDISHR EAFSTAAKNW AHYPNIHFGL SPGREGGKKL  180
VDEAVSASPA PKKIQGLY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.25270.0callus| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG553300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0358122e-71BT035812.1 Zea mays full-length cDNA clone ZM_BFb0084F06 mRNA, complete cds.
GenBankBT0416682e-71BT041668.1 Zea mays full-length cDNA clone ZM_BFb0028G13 mRNA, complete cds.
GenBankBT0684092e-71BT068409.1 Zea mays full-length cDNA clone ZM_BFb0157I12 mRNA, complete cds.
GenBankKJ7268492e-71KJ726849.1 Zea mays clone pUT3389 C2C2-YABBY transcription factor (YAB5) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804907.11e-144protein YABBY 6-like isoform X1
SwissprotQ2QM171e-91YAB6_ORYSJ; Protein YABBY 6
TrEMBLA0A2S3HFJ41e-143A0A2S3HFJ4_9POAL; Uncharacterized protein
STRINGSi023308m1e-132(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.25e-60YABBY family protein