PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG556300.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 225aa    MW: 26182.1 Da    PI: 8.87
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG556300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA38.91.2e-1273105133
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                          CsnC + +Tp WR+gp+g  +LCnaCGl+ +++
  Pavir.3KG556300.2.p  73 CSNCLSCETPRWRNGPSGIQMLCNACGLRLKSE 105
                          *****************************9987 PP
2GATA52.66.2e-17155189135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++C ++ Tp+WR+gp g+ tLCnaCG+++++ +l
  Pavir.3KG556300.2.p 155 CTHCMSSRTPQWRSGPFGPMTLCNACGVRFKSGRL 189
                          *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.8E-1067118IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.92767121IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-1369114IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577164.75E-1170109No hitNo description
CDDcd002021.01E-1072104No hitNo description
PfamPF003201.5E-1073105IPR000679Zinc finger, GATA-type
PROSITE patternPS0034407398IPR000679Zinc finger, GATA-type
SMARTSM004015.4E-14149203IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.503149185IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-14150212No hitNo description
Gene3DG3DSA:3.30.50.105.3E-13153187IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.16E-11154201No hitNo description
PROSITE patternPS003440155180IPR000679Zinc finger, GATA-type
PfamPF003204.3E-15155189IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGNDDDQQYI IPLYVEPPLL LIDQKHWMAE SELILPKKEE QKVCQQQEQE QEEEKCQKGV  60
LVQFRQERLV KRCSNCLSCE TPRWRNGPSG IQMLCNACGL RLKSENRFAT ISEEHYGQET  120
KKEQEPGKRQ DKKKKMIKKT YVSEELSSDK QEKRCTHCMS SRTPQWRSGP FGPMTLCNAC  180
GVRFKSGRLL PEYRPANSPT FVSFLHSYSH KKVMQMRQAI AYKE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127134KRQDKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG556300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810144.11e-128GATA transcription factor 4-like
TrEMBLA0A3L6SXV01e-127A0A3L6SXV0_PANMI; GATA transcription factor
STRINGPavir.Ca02937.1.p1e-167(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-32GATA transcription factor 4