PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG561900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 391aa    MW: 40832.4 Da    PI: 6.9093
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG561900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.53.3e-15195241455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h ++ErrRR++iN++f eL +++P +     kK++Ka+iL  Av+Y+++Lq
  Pavir.3KG561900.1.p 195 DHIIAERRRREKINQRFIELSTVIPGL-----KKMDKATILGDAVKYVRELQ 241
                          5999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.955191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-19195250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-12196241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-17196250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.12E-15196245No hitNo description
SMARTSM003535.1E-17197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MDRHMEDSST FLQWAMNQLH HQHPSAAAAA AAASAYHDGA GAGDREAIFP SLHALRRGAG  60
QTQSSQQPVA ASVRVRDLTV QVDHLTNSSS SGDSPGAGDA MDHDAAAGWS PHTARSRTTG  120
LGGGGGGGNN WPVSWNFSAA SAQPTRESGG GGALPDAAVA ARVVQLASAG RRGSSSAAPP  180
AATAAASSSP GPVQDHIIAE RRRREKINQR FIELSTVIPG LKKMDKATIL GDAVKYVREL  240
QEKVKTLEED GAHSAGGSSI QSAVLVKKPC HHLPGDEAMA SSNGGGAGGV QLPEIEARLS  300
EKSVLLRIHC YNARGLLVRV ISEVEQMHLS ITHTNVMPFP ASTAIITITA KVEEGFTATV  360
DEIVRSINSV LHQHYSSSSE EKEDTKVDYC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-14195250863Transcription factor MYC2
5gnj_B7e-14195250863Transcription factor MYC2
5gnj_E7e-14195250863Transcription factor MYC2
5gnj_F7e-14195250863Transcription factor MYC2
5gnj_G7e-14195250863Transcription factor MYC2
5gnj_I7e-14195250863Transcription factor MYC2
5gnj_M7e-14195250863Transcription factor MYC2
5gnj_N7e-14195250863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199204ERRRRE
2200205RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG561900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808672.10.0transcription factor bHLH25-like
RefseqXP_025808673.10.0transcription factor bHLH25-like
RefseqXP_025808674.10.0transcription factor bHLH25-like
RefseqXP_025808675.10.0transcription factor bHLH25-like
TrEMBLA0A2T7EJP40.0A0A2T7EJP4_9POAL; Uncharacterized protein
STRINGPavir.J30022.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-43bHLH family protein