PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG567800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 188aa    MW: 20894.5 Da    PI: 11.0777
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG567800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.91.9e-162473255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr +k rg+W+AeIr+p +   r+r++lg++ t+  Aa+a++ a ++l+g
  Pavir.3KG567800.1.p 24 QYRGVRMRK-RGKWAAEIREPHK---RTRIWLGSYATPVAAARAYDTAVLYLRG 73
                         69******9.8*********732...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.3E-282382IPR001471AP2/ERF domain
SMARTSM003808.3E-332487IPR001471AP2/ERF domain
PfamPF008476.7E-102473IPR001471AP2/ERF domain
CDDcd000181.18E-232482No hitNo description
PROSITE profilePS5103221.4432481IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-202483IPR016177DNA-binding domain
PRINTSPR003678.1E-72536IPR001471AP2/ERF domain
PRINTSPR003678.1E-74763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEEQASAAGP QAPAPLQQMQ PRRQYRGVRM RKRGKWAAEI REPHKRTRIW LGSYATPVAA  60
ARAYDTAVLY LRGRSARLNF TDEIPALALA EGGGGSTLSA ASIRKKAIEV GSRVDALQTG  120
MMVAPPHHRE RQRHHHGHHG LPQLQLQLHA EEEQRQQEQK QQRAAWSGRA KNPDLNRAPS  180
PESSDTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1124831474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.41421e-116callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG567800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0701303e-94BT070130.1 Zea mays full-length cDNA clone ZM_BFc0110K17 mRNA, complete cds.
GenBankEU9669063e-94EU966906.1 Zea mays clone 298090 dehydration responsive element binding protein mRNA, complete cds.
GenBankKJ7278783e-94KJ727878.1 Zea mays clone pUT5971 AP2-EREBP transcription factor (EREB47) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826193.12e-83ethylene-responsive transcription factor RAP2-10-like
TrEMBLA0A2T7D1252e-82A0A2T7D125_9POAL; Uncharacterized protein
STRINGPavir.J27349.1.p3e-89(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.12e-41DREB and EAR motif protein 3