PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG568100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 190aa    MW: 20925.3 Da    PI: 6.8622
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG568100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.15.1e-1080140363
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          e +r  r+ +NR++A rsR  K++ ++ L + v  L + N  L + l++   +++ +  e+
  Pavir.3KG568100.1.p  80 EERRRHRMVSNRLSAARSRMHKEQHLDDLCQQVSRLRGVNLHLLDHLSRTVRHCEDVHREN 140
                          668899**************************************99999999999877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.1E-877134No hitNo description
SMARTSM003381.6E-778142IPR004827Basic-leucine zipper domain
PfamPF001704.0E-879139IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.77E-982134No hitNo description
CDDcd147025.22E-1283133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MNMYDQAYFP QSFKPASAFH DAASLLAVDG SDMASIEPDT VVQEAAHLAG RNGSPSSGTG  60
SDGAAGSGYQ MNKVSLAAEE ERRRHRMVSN RLSAARSRMH KEQHLDDLCQ QVSRLRGVNL  120
HLLDHLSRTV RHCEDVHREN AWLRDEKAEL VKKLEQQLQS ATARENTIDH AAETSGGARI  180
EPKWGLVLQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG568100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973757.12e-43G-box-binding factor 1
TrEMBLA0A3L6RJ776e-49A0A3L6RJ77_PANMI; G-box-binding factor 1
STRINGPavir.J36629.1.p1e-138(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118635126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13600.12e-13basic leucine-zipper 58