PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG003500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 189aa    MW: 20553.3 Da    PI: 8.586
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG003500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS148.56.2e-467158226374
                 GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetl 312
                           +L++ +  sPk+vv++eqea hn++sF +r++eal+yy+a +dsl+a +++      er+ vEr++lg+e++ v+  ega+rrerh +l
  Pavir.3NG003500.1.p   7 GFLSAARAASPKIVVLAEQEAGHNGASFRKRVAEALSYYAAAYDSLDAAAAAYRrpaAERAEVERAVLGEEVRGVLLREGARRRERHDRL 96 
                          69********************************************777554434559******************************** PP

                 GRAS 313 ekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          ++W +r+e aGF+ vpls+ a  q    lr++++ g +  e+ g+++l+W++ pL+svSaWr
  Pavir.3NG003500.1.p  97 HQWARRMEVAGFRGVPLSYAALRQGVDTLRRCGVGGCESREHGGCMLLCWRSWPLYSVSAWR 158
                          *************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098520.9241138IPR005202Transcription factor GRAS
PfamPF035142.1E-437158IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MPAALAGFLS AARAASPKIV VLAEQEAGHN GASFRKRVAE ALSYYAAAYD SLDAAAAAYR  60
RPAAERAEVE RAVLGEEVRG VLLREGARRR ERHDRLHQWA RRMEVAGFRG VPLSYAALRQ  120
GVDTLRRCGV GGCESREHGG CMLLCWRSWP LYSVSAWRPD RGSAYGVGSG YLSPSAPPDH  180
CFDEELMC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-1716159241379Protein SCARECROW
5b3h_D4e-1716159241379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG003500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805496.11e-105scarecrow-like protein 3
RefseqXP_025827469.11e-105scarecrow-like protein 3
TrEMBLA0A2S3ICA31e-104A0A2S3ICA3_9POAL; Uncharacterized protein
TrEMBLA0A3L6RCR91e-105A0A3L6RCR9_PANMI; Scarecrow-like protein 3
STRINGPavir.J31854.1.p1e-131(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-17scarecrow-like 3