PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG006200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 250aa    MW: 26956.7 Da    PI: 7.3703
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG006200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM545.5e-17121283127
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkklelee..vikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          +GfrF+Pt  e  ++yL + v+g +l+++   vi+++ +y +eP dL ++++   ++ + +fF++ +k        +r +  g+W  +  
  Pavir.3NG006200.1.p  12 RGFRFNPTPLEAATYYLPRLVAGAPLHEAVrpVIHHAAVYACEPADLARQFRPmpRTGHRFFFTSCRKG------VRR-AGPGFWTLQRM 94 
                          7************************55532226**************8644442244477999888764......355.577***98866 PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                           + +++ kg++vg  k L +     ++g  tdW+m+ey+
  Pavir.3NG006200.1.p  95 -TVIMDGKGAKVGEIKKLRYK----KRGAYTDWLMDEYS 128
                          .67888899**********97....78889********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-217150IPR003441NAC domain
PROSITE profilePS5100521.37910150IPR003441NAC domain
PfamPF023659.4E-1112128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MAPLLGAEIF SRGFRFNPTP LEAATYYLPR LVAGAPLHEA VRPVIHHAAV YACEPADLAR  60
QFRPMPRTGH RFFFTSCRKG VRRAGPGFWT LQRMTVIMDG KGAKVGEIKK LRYKKRGAYT  120
DWLMDEYSTC CSEDAVVGDR QYVFCNIYVS PKAAPDSAAR QESAAFLAPP STAPAPPAPV  180
VIAQAPPLKR PAPQAAEPPC PKRTRGAVFA ASDLPSEESP AADQDDELVE STEGIVPTAE  240
AEEAAANSE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.160062e-62stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG006200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827463.11e-127atherin-like
TrEMBLA0A2T8I7921e-126A0A2T8I792_9POAL; Uncharacterized protein
STRINGPavir.J16079.1.p1e-156(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.14e-12NAC domain containing protein 53