PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG007100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 206aa    MW: 22737 Da    PI: 8.1421
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG007100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM41.63.9e-13810333127
                  NAM  33 vikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgk....rknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkg 116
                          +i+++d+y +eP++L ++++   ++ + +fF++ + ++++      +++ra+ +g W+++  + +v++ k+ +vg  + L +     + g
  Pavir.3NG007100.1.p   8 FIHHADVYACEPSELARQFRPlpRTGHRFFFTHCKLQQPHRAgkacKATRAAGAGSWHSQSVT-DVVDGKQVKVGEMRKLRYK----KGG 92 
                          599************86544433455889999988888743323448889999*****99885.555659999*********8....456 PP

                  NAM 117 ektdWvmheyr 127
                            tdW+m+ey+
  Pavir.3NG007100.1.p  93 AYTDWLMDEYS 103
                          789*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.6451124IPR003441NAC domain
SuperFamilySSF1019411.7E-145109IPR003441NAC domain
PfamPF023651.2E-628103IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MHEAVRPFIH HADVYACEPS ELARQFRPLP RTGHRFFFTH CKLQQPHRAG KACKATRAAG  60
AGSWHSQSVT DVVDGKQVKV GEMRKLRYKK GGAYTDWLMD EYSCCLQDAV VGDRQYMFSN  120
IYVSPRAAPG SAARQESAAF FAPPAPVVIK QAPPPPPKMP APQVAVPTAE AEEEAPANWT  180
MADDEKEQHL LCNETVIVPK ERILA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.160061e-57stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG007100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980141.12e-78pollen-specific leucine-rich repeat extensin-like protein 1
TrEMBLA0A3L6Q4764e-93A0A3L6Q476_PANMI; Uncharacterized protein
TrEMBLA0A3L6RC408e-95A0A3L6RC40_PANMI; Uncharacterized protein
STRINGPavir.Cb02140.1.p1e-103(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34180.22e-07NAC domain containing protein 16