PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG019300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 209aa    MW: 22386.4 Da    PI: 10.0035
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG019300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.73.7e-11131193163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          eke kr rr   NRe+Ar   +R++a  +eL++kv+ L++eN++ kke +   ke+ +lk  +
  Pavir.3NG019300.1.p 131 EKEAKRLRRVLANRESARQTILRRQAIRDELARKVADLSSENETIKKEKDLVMKEYLSLKETN 193
                          89**********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.1E-6129195No hitNo description
SMARTSM003387.7E-13131195IPR004827Basic-leucine zipper domain
PfamPF001706.1E-10131194IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.231133196IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.57E-7135191No hitNo description
CDDcd147021.55E-11136186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MSDDQQRGGG GGQRQCRRGI TPDVELGAAL ALANMAGCSV GLGPAAERAQ PKAKARPAVV  60
QLHTCAAAEE AMSDDEEMAS TRLSLQLGMV GIQSSSCSSA GRPSSRQPAP AHAAAPATHG  120
PRPRHMLTEA EKEAKRLRRV LANRESARQT ILRRQAIRDE LARKVADLSS ENETIKKEKD  180
LVMKEYLSLK ETNKQLKAQA HDLSLSLF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG019300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809461.11e-121light-inducible protein CPRF2-like
TrEMBLA0A2S3H5Z71e-119A0A2S3H5Z7_9POAL; Uncharacterized protein
TrEMBLA0A2T7E5991e-119A0A2T7E599_9POAL; Uncharacterized protein
STRINGPavir.Cb02058.1.p1e-148(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31653475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.11e-17bZIP family protein